Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.31■□□□□ 0.36
Sox3P53784 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sox3P53784 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sox3P53784 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sox3P53784 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Sox3P53784 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sox3P53784 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.3■□□□□ 0.36
Sox3P53784 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.3■□□□□ 0.36
Sox3P53784 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sox3P53784 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sox3P53784 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sox3P53784 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sox3P53784 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sox3P53784 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Sox3P53784 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Sox3P53784 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Sox3P53784 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sox3P53784 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Sox3P53784 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.29■□□□□ 0.36
Sox3P53784 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sox3P53784 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sox3P53784 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Sox3P53784 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Sox3P53784 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.29■□□□□ 0.36
Sox3P53784 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Sox3P53784 Gm18666-201ENSMUST00000190039 958 ntBASIC17.29■□□□□ 0.36
Sox3P53784 Gm21362-201ENSMUST00000194272 928 ntBASIC17.29■□□□□ 0.36
Sox3P53784 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Sox3P53784 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sox3P53784 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC17.29■□□□□ 0.36
Sox3P53784 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.29■□□□□ 0.36
Sox3P53784 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sox3P53784 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sox3P53784 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Sox3P53784 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Sox3P53784 Gm43182-201ENSMUST00000199476 2528 ntBASIC17.28■□□□□ 0.36
Sox3P53784 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Sox3P53784 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Sox3P53784 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Sox3P53784 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sox3P53784 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sox3P53784 AC124603.1-201ENSMUST00000223843 308 ntBASIC17.28■□□□□ 0.36
Sox3P53784 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sox3P53784 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.28■□□□□ 0.36
Sox3P53784 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Sox3P53784 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Sox3P53784 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sox3P53784 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sox3P53784 Dmtn-210ENSMUST00000228824 2377 ntBASIC17.28■□□□□ 0.36
Sox3P53784 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sox3P53784 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Sox3P53784 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
Sox3P53784 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Sox3P53784 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Sox3P53784 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.27■□□□□ 0.36
Sox3P53784 Gm11249-201ENSMUST00000117071 859 ntBASIC17.27■□□□□ 0.36
Sox3P53784 Gm6433-201ENSMUST00000118634 875 ntBASIC17.27■□□□□ 0.36
Sox3P53784 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.27■□□□□ 0.36
Sox3P53784 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC17.27■□□□□ 0.36
Sox3P53784 Gm10459-201ENSMUST00000202708 1155 ntBASIC17.27■□□□□ 0.36
Sox3P53784 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.27■□□□□ 0.36
Sox3P53784 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.27■□□□□ 0.36
Sox3P53784 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Sox3P53784 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Sox3P53784 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.27■□□□□ 0.35
Sox3P53784 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Sox3P53784 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Sox3P53784 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox3P53784 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox3P53784 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox3P53784 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Sox3P53784 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Sox3P53784 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Sox3P53784 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Sox3P53784 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Sox3P53784 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Sox3P53784 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox3P53784 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Sox3P53784 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.26■□□□□ 0.35
Sox3P53784 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Sox3P53784 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.26■□□□□ 0.35
Sox3P53784 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.26■□□□□ 0.35
Sox3P53784 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Sox3P53784 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.25■□□□□ 0.35
Sox3P53784 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
Sox3P53784 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms