Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cdx2P43241 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Cdx2P43241 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Gm12085-201ENSMUST00000119263 940 ntBASIC17.26■□□□□ 0.35
Cdx2P43241 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Cdx2P43241 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdx2P43241 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC17.25■□□□□ 0.35
Cdx2P43241 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdx2P43241 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdx2P43241 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdx2P43241 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdx2P43241 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cdx2P43241 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cdx2P43241 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cdx2P43241 Gm23634-201ENSMUST00000175071 91 ntBASIC17.25■□□□□ 0.35
Cdx2P43241 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cdx2P43241 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC17.25■□□□□ 0.35
Cdx2P43241 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cdx2P43241 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdx2P43241 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Cdx2P43241 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cdx2P43241 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx2P43241 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx2P43241 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Cdx2P43241 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.24■□□□□ 0.35
Cdx2P43241 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx2P43241 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx2P43241 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx2P43241 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC17.24■□□□□ 0.35
Cdx2P43241 Gm6728-201ENSMUST00000178117 1065 ntBASIC17.24■□□□□ 0.35
Cdx2P43241 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx2P43241 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cdx2P43241 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx2P43241 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx2P43241 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdx2P43241 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx2P43241 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx2P43241 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx2P43241 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx2P43241 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Cdx2P43241 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Cdx2P43241 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Cdx2P43241 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx2P43241 Mir2861-201ENSMUST00000175539 82 ntBASIC17.23■□□□□ 0.35
Cdx2P43241 Gm27463-201ENSMUST00000183569 57 ntBASIC17.23■□□□□ 0.35
Cdx2P43241 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC17.23■□□□□ 0.35
Cdx2P43241 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Cdx2P43241 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx2P43241 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cdx2P43241 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cdx2P43241 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx2P43241 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Cdx2P43241 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdx2P43241 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Cdx2P43241 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx2P43241 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Cdx2P43241 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Cdx2P43241 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
Cdx2P43241 Notumos-201ENSMUST00000151998 2659 ntBASIC17.22■□□□□ 0.35
Cdx2P43241 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx2P43241 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx2P43241 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx2P43241 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Cdx2P43241 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC17.22■□□□□ 0.35
Cdx2P43241 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
Cdx2P43241 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Cdx2P43241 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx2P43241 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx2P43241 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdx2P43241 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx2P43241 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx2P43241 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Cdx2P43241 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx2P43241 Gm10013-201ENSMUST00000106074 672 ntBASIC17.21■□□□□ 0.35
Cdx2P43241 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC17.21■□□□□ 0.35
Cdx2P43241 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC17.21■□□□□ 0.35
Cdx2P43241 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC17.21■□□□□ 0.35
Cdx2P43241 Gm10517-202ENSMUST00000192970 758 ntBASIC17.21■□□□□ 0.35
Cdx2P43241 Gm45058-201ENSMUST00000205810 766 ntBASIC17.21■□□□□ 0.35
Cdx2P43241 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx2P43241 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cdx2P43241 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cdx2P43241 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdx2P43241 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Cdx2P43241 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdx2P43241 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cdx2P43241 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.2■□□□□ 0.34
Cdx2P43241 Gm18032-201ENSMUST00000222541 538 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms