Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Msh3P13705 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh3P13705 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh3P13705 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Msh3P13705 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.99■□□□□ 0.79
Msh3P13705 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh3P13705 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh3P13705 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Msh3P13705 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
Msh3P13705 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.99■□□□□ 0.79
Msh3P13705 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Msh3P13705 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh3P13705 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh3P13705 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh3P13705 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh3P13705 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.98■□□□□ 0.79
Msh3P13705 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh3P13705 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Msh3P13705 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh3P13705 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh3P13705 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Msh3P13705 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Msh3P13705 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Msh3P13705 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Msh3P13705 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Msh3P13705 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.97■□□□□ 0.79
Msh3P13705 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.97■□□□□ 0.79
Msh3P13705 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Gm4968-201ENSMUST00000071458 858 ntBASIC19.97■□□□□ 0.79
Msh3P13705 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Msh3P13705 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Msh3P13705 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC19.97■□□□□ 0.79
Msh3P13705 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh3P13705 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh3P13705 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh3P13705 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh3P13705 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh3P13705 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh3P13705 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Msh3P13705 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Msh3P13705 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Msh3P13705 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Msh3P13705 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.96■□□□□ 0.79
Msh3P13705 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Msh3P13705 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.95■□□□□ 0.78
Msh3P13705 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.95■□□□□ 0.78
Msh3P13705 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC19.95■□□□□ 0.78
Msh3P13705 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Msh3P13705 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh3P13705 Flg-201ENSMUST00000050758 1488 ntBASIC19.94■□□□□ 0.78
Msh3P13705 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh3P13705 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.94■□□□□ 0.78
Msh3P13705 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh3P13705 Gm10602-201ENSMUST00000098239 609 ntBASIC19.94■□□□□ 0.78
Msh3P13705 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh3P13705 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Msh3P13705 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh3P13705 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Msh3P13705 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC19.93■□□□□ 0.78
Msh3P13705 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Msh3P13705 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Msh3P13705 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC19.93■□□□□ 0.78
Msh3P13705 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
Msh3P13705 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms