Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC14.06□□□□□ -0.16
Hoxd3P09027 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hoxd3P09027 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hoxd3P09027 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Hoxd3P09027 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hoxd3P09027 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC14.06□□□□□ -0.16
Hoxd3P09027 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Hoxd3P09027 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hoxd3P09027 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Hoxd3P09027 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Hoxd3P09027 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Hoxd3P09027 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC14.05□□□□□ -0.16
Hoxd3P09027 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC14.05□□□□□ -0.16
Hoxd3P09027 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Hoxd3P09027 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Hoxd3P09027 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC14.05□□□□□ -0.16
Hoxd3P09027 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC14.05□□□□□ -0.16
Hoxd3P09027 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Hoxd3P09027 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Gm13158-201ENSMUST00000122007 736 ntBASIC14.04□□□□□ -0.16
Hoxd3P09027 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Hoxd3P09027 Gm37805-201ENSMUST00000192612 1094 ntBASIC14.04□□□□□ -0.16
Hoxd3P09027 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC14.04□□□□□ -0.16
Hoxd3P09027 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Hoxd3P09027 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC14.04□□□□□ -0.16
Hoxd3P09027 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC14.04□□□□□ -0.16
Hoxd3P09027 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Hoxd3P09027 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Hoxd3P09027 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Hoxd3P09027 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hoxd3P09027 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hoxd3P09027 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hoxd3P09027 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Hoxd3P09027 Gm11927-201ENSMUST00000118472 759 ntBASIC14.03□□□□□ -0.16
Hoxd3P09027 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hoxd3P09027 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
Hoxd3P09027 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC14.03□□□□□ -0.16
Hoxd3P09027 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hoxd3P09027 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Hoxd3P09027 Nrn1-203ENSMUST00000223611 1443 ntBASIC14.03□□□□□ -0.16
Hoxd3P09027 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hoxd3P09027 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hoxd3P09027 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Hoxd3P09027 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
Hoxd3P09027 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Hoxd3P09027 Golph3-205ENSMUST00000228671 2842 ntBASIC14.02□□□□□ -0.16
Hoxd3P09027 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hoxd3P09027 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hoxd3P09027 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hoxd3P09027 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Hoxd3P09027 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC14.02□□□□□ -0.17
Hoxd3P09027 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Hoxd3P09027 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC14.02□□□□□ -0.17
Hoxd3P09027 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC14.02□□□□□ -0.17
Hoxd3P09027 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hoxd3P09027 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hoxd3P09027 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Hoxd3P09027 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC14.01□□□□□ -0.17
Hoxd3P09027 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms