Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm38173-201ENSMUST00000193126 2314 ntBASIC6.17□□□□□ -1.42
Col8a1Q00780 Cep85l-204ENSMUST00000220376 2339 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
Col8a1Q00780 Efl1-201ENSMUST00000039881 3610 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Col8a1Q00780 Alkbh8-201ENSMUST00000053407 3603 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
Col8a1Q00780 Txlnb-201ENSMUST00000037964 4422 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Col8a1Q00780 Pex5l-211ENSMUST00000194016 4206 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Col8a1Q00780 Gbp11-202ENSMUST00000171587 1329 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Col8a1Q00780 Olfr285-202ENSMUST00000216901 5330 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
Col8a1Q00780 Rnf219-202ENSMUST00000227640 1632 ntAPPRIS ALT2 BASIC6.17□□□□□ -1.42
Col8a1Q00780 Gm28395-201ENSMUST00000187794 2168 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Col8a1Q00780 Gm28571-201ENSMUST00000188922 2168 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Col8a1Q00780 Panct2-201ENSMUST00000181489 3849 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Col8a1Q00780 Arf4-202ENSMUST00000112318 1367 ntTSL 5 BASIC6.17□□□□□ -1.42
Col8a1Q00780 Gm7842-201ENSMUST00000217691 1379 ntBASIC6.17□□□□□ -1.42
Col8a1Q00780 Olfr1426-207ENSMUST00000220005 2466 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
Col8a1Q00780 Gm42636-201ENSMUST00000197174 2239 ntBASIC6.17□□□□□ -1.42
Col8a1Q00780 Smarcal1-201ENSMUST00000047615 3059 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Col8a1Q00780 Mllt3-202ENSMUST00000126353 1956 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Col8a1Q00780 Arhgap17-201ENSMUST00000098060 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Synpr-202ENSMUST00000112656 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 AC153729.1-201ENSMUST00000214055 2562 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 D330045A20Rik-201ENSMUST00000046763 3737 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Pcdh15-208ENSMUST00000125006 4863 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Pcdh15-232ENSMUST00000177420 4878 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm16427-202ENSMUST00000200745 1749 ntAPPRIS P5 TSL 2 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Fcrl5-204ENSMUST00000193229 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Pcdh15-234ENSMUST00000191854 9104 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Olfr381-204ENSMUST00000215358 2658 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Efhb-201ENSMUST00000024725 2661 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Kcnma1-203ENSMUST00000100831 3261 ntTSL 5 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Mcm4-201ENSMUST00000023353 3589 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm37510-201ENSMUST00000194151 4762 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Pcdh15-215ENSMUST00000131321 6926 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Mapk1ip1l-202ENSMUST00000166743 4542 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Parp8-201ENSMUST00000022239 3098 ntTSL 5 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm2108-201ENSMUST00000165058 2177 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm7972-203ENSMUST00000209180 2184 ntTSL 3 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Nol8-205ENSMUST00000222197 4368 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Klrc2-205ENSMUST00000145984 2811 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Rdx-203ENSMUST00000163153 4131 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Ulk4-209ENSMUST00000171923 4103 ntAPPRIS P2 TSL 5 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Ighv11-2-201ENSMUST00000103468 461 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Tardbp-205ENSMUST00000105700 923 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Lrrc69-202ENSMUST00000108276 1210 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Ppp1r1c-203ENSMUST00000111780 708 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm5228-201ENSMUST00000117186 357 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm11416-201ENSMUST00000119111 863 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm15828-201ENSMUST00000119911 522 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm7212-201ENSMUST00000120817 348 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm11404-201ENSMUST00000120872 494 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm14990-201ENSMUST00000122354 445 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm15743-201ENSMUST00000129645 242 ntTSL 3 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm13963-201ENSMUST00000143525 892 ntTSL 3 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm17377-201ENSMUST00000165184 207 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Vmn1r1-201ENSMUST00000169123 921 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Vmn1r-ps152-201ENSMUST00000176452 699 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Crnde-205ENSMUST00000179400 651 ntTSL 2 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Rhox4a2-201ENSMUST00000179915 901 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm28228-201ENSMUST00000186880 632 ntTSL 5 BASIC6.16□□□□□ -1.42
Col8a1Q00780 1700025K24Rik-201ENSMUST00000190635 740 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 7530428D23Rik-201ENSMUST00000191725 765 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm37148-201ENSMUST00000195097 716 ntTSL 5 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm38562-201ENSMUST00000199398 1126 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm38395-201ENSMUST00000199904 830 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm43762-201ENSMUST00000201521 295 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm44075-201ENSMUST00000204208 216 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 1810049I09Rik-201ENSMUST00000205499 453 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Klk1b12-ps-201ENSMUST00000206650 751 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm4972-201ENSMUST00000211108 1254 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 AC172194.1-201ENSMUST00000214246 1020 ntTSL 5 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm5080-201ENSMUST00000220341 743 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm32300-201ENSMUST00000221735 515 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm6369-201ENSMUST00000069626 412 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Vmn1r80-201ENSMUST00000075053 927 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Rpl35a-ps7-201ENSMUST00000080603 333 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Vmn1r204-201ENSMUST00000091728 909 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm13212-201ENSMUST00000097794 1221 ntTSL 5 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Nox1-201ENSMUST00000033610 2563 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Srrm1-201ENSMUST00000030613 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm37364-201ENSMUST00000192533 3920 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Mapk10-202ENSMUST00000112846 2617 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Btbd3-201ENSMUST00000075410 4940 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Hsf3-205ENSMUST00000179832 1972 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Npr3-204ENSMUST00000228489 1969 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Psma8-201ENSMUST00000040860 1693 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Cfap74-203ENSMUST00000105619 2364 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
Col8a1Q00780 AC122408.2-201ENSMUST00000217901 1391 ntBASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm45056-201ENSMUST00000208140 3462 ntTSL 5 BASIC6.16□□□□□ -1.42
Col8a1Q00780 Itgae-202ENSMUST00000102537 3825 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Sgcg-201ENSMUST00000077954 3515 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Gm805-201ENSMUST00000181667 3160 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Glmn-203ENSMUST00000100949 1759 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Col8a1Q00780 Rfx3-204ENSMUST00000172907 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
Col8a1Q00780 Zmynd8-202ENSMUST00000088113 3757 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
Col8a1Q00780 Gm28965-201ENSMUST00000186015 1500 ntTSL 5 BASIC6.15□□□□□ -1.42
Col8a1Q00780 Olfr90-203ENSMUST00000215195 3060 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
Col8a1Q00780 Masp2-201ENSMUST00000052060 3058 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
Col8a1Q00780 Gm29571-201ENSMUST00000191547 1909 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
Col8a1Q00780 Olfr449-204ENSMUST00000214687 1921 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
Col8a1Q00780 Gm42656-201ENSMUST00000201506 2305 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 76,532 protein–RNA pairs in 85.7 ms