Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm44705-201ENSMUST00000206719 339 ntBASIC5.7□□□□□ -1.5
Nkx3-1P97436 Gm18851-201ENSMUST00000210087 1058 ntBASIC5.7□□□□□ -1.5
Nkx3-1P97436 Gm45448-201ENSMUST00000211739 209 ntBASIC5.7□□□□□ -1.5
Nkx3-1P97436 Gm34263-202ENSMUST00000214353 303 ntTSL 5 BASIC5.7□□□□□ -1.5
Nkx3-1P97436 Gm36855-202ENSMUST00000216439 754 ntTSL 3 BASIC5.7□□□□□ -1.5
Nkx3-1P97436 CT868720.2-201ENSMUST00000221207 413 ntTSL 3 BASIC5.7□□□□□ -1.5
Nkx3-1P97436 A1cf-203ENSMUST00000224400 1204 ntBASIC5.7□□□□□ -1.5
Nkx3-1P97436 AC102139.1-201ENSMUST00000227000 251 ntBASIC5.7□□□□□ -1.5
Nkx3-1P97436 4933411G06Rik-201ENSMUST00000075909 1022 ntBASIC5.7□□□□□ -1.5
Nkx3-1P97436 Gm7731-201ENSMUST00000091759 470 ntBASIC5.7□□□□□ -1.5
Nkx3-1P97436 5830432E09Rik-201ENSMUST00000180693 3569 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Nkx3-1P97436 Nedd9-201ENSMUST00000021794 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
Nkx3-1P97436 Pik3c2g-215ENSMUST00000218528 2712 ntTSL 5 BASIC5.7□□□□□ -1.5
Nkx3-1P97436 A930004J17Rik-201ENSMUST00000192689 4610 ntBASIC5.7□□□□□ -1.5
Nkx3-1P97436 AC163660.4-201ENSMUST00000224983 2171 ntBASIC5.7□□□□□ -1.5
Nkx3-1P97436 Gm30931-202ENSMUST00000211698 1320 ntTSL 3 BASIC5.7□□□□□ -1.5
Nkx3-1P97436 Gm28472-202ENSMUST00000190133 1499 ntTSL 5 BASIC5.7□□□□□ -1.5
Nkx3-1P97436 Gm28789-202ENSMUST00000190429 1499 ntTSL 5 BASIC5.7□□□□□ -1.5
Nkx3-1P97436 Olfr770-203ENSMUST00000204250 1644 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
Nkx3-1P97436 Slc4a4-203ENSMUST00000130041 3335 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm36527-201ENSMUST00000195500 3029 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Slc22a26-202ENSMUST00000120522 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Vmn2r-ps159-203ENSMUST00000189559 2560 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Nsun4-202ENSMUST00000030475 2439 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 AC139941.2-201ENSMUST00000221565 1824 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm4806-201ENSMUST00000222704 1690 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Aox1-201ENSMUST00000001027 4423 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Wfdc8-203ENSMUST00000109339 3227 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Ankfy1-206ENSMUST00000155998 8030 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Rabep1-202ENSMUST00000081362 2469 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm43864-201ENSMUST00000204452 4028 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm28667-201ENSMUST00000189873 2171 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Tcf7l2-201ENSMUST00000041717 3590 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm21955-201ENSMUST00000194137 4968 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 AC154612.1-202ENSMUST00000224806 1725 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 BC003331-201ENSMUST00000006167 1716 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 4921534H16Rik-202ENSMUST00000162911 2838 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Pkn2-206ENSMUST00000173830 2808 ntTSL 5 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Alpk2-201ENSMUST00000035548 7249 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm20121-201ENSMUST00000198547 1594 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Vps8-207ENSMUST00000122235 2521 ntTSL 5 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Mapk10-205ENSMUST00000128869 2518 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm27179-201ENSMUST00000184652 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Snora35-201ENSMUST00000104579 128 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm14158-201ENSMUST00000118409 308 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm7058-201ENSMUST00000119209 902 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Rps13-ps6-201ENSMUST00000120038 428 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm14796-201ENSMUST00000121216 959 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm16196-201ENSMUST00000137730 464 ntTSL 3 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 AI847159-203ENSMUST00000141786 915 ntTSL 2 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm13166-203ENSMUST00000144166 326 ntTSL 3 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm14507-201ENSMUST00000156169 347 ntTSL 2 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm24343-201ENSMUST00000158708 111 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 4930448H16Rik-201ENSMUST00000159838 580 ntTSL 5 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm22701-201ENSMUST00000175371 291 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Ccl27b-201ENSMUST00000177785 425 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm23450-201ENSMUST00000178285 91 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm9658-201ENSMUST00000182757 1012 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm28885-201ENSMUST00000185615 563 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm37705-201ENSMUST00000195111 577 ntTSL 5 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Olrf445-ps1-201ENSMUST00000204960 314 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm44571-201ENSMUST00000208092 533 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Olfr374-201ENSMUST00000209675 1053 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 AC112680.2-201ENSMUST00000213119 595 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm5831-201ENSMUST00000216016 1209 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 4930543I11Rik-201ENSMUST00000219006 959 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 AC122327.2-201ENSMUST00000220883 120 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 AC122327.3-201ENSMUST00000221852 120 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm5374-202ENSMUST00000222910 314 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 AC166341.1-201ENSMUST00000223360 105 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Lcn12-201ENSMUST00000028312 716 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Clec2g-202ENSMUST00000075789 729 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 2700062C07Rik-201ENSMUST00000097646 1040 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm38077-201ENSMUST00000193657 3245 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Zfp266-201ENSMUST00000068296 2266 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm26530-201ENSMUST00000180969 3941 ntTSL 5 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm38082-201ENSMUST00000192800 6882 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Fbxw19-201ENSMUST00000076617 1483 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Mospd2-202ENSMUST00000112247 2479 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Tnfsf4-201ENSMUST00000028024 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 C130075A20Rik-201ENSMUST00000198178 4176 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Slc30a7-201ENSMUST00000067485 9020 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Sp100-212ENSMUST00000153574 1653 ntTSL 5 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Gm21051-201ENSMUST00000221757 1688 ntBASIC5.69□□□□□ -1.5
Nkx3-1P97436 Vmn1r40-205ENSMUST00000228642 2862 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
Nkx3-1P97436 Ap4e1-201ENSMUST00000002063 4600 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Nkx3-1P97436 Olfr1309-204ENSMUST00000215045 5236 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Nkx3-1P97436 Vmn1r176-204ENSMUST00000227129 2955 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Nkx3-1P97436 Vmn1r176-207ENSMUST00000228793 2959 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Nkx3-1P97436 Ralgapa2-205ENSMUST00000131824 5624 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
Nkx3-1P97436 Cep120-201ENSMUST00000049811 4553 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Nkx3-1P97436 Grm8-202ENSMUST00000115323 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
Nkx3-1P97436 Zcchc7-208ENSMUST00000147272 4251 ntTSL 2 BASIC5.68□□□□□ -1.5
Nkx3-1P97436 AC116476.1-201ENSMUST00000226274 2318 ntBASIC5.68□□□□□ -1.5
Nkx3-1P97436 Tet2-204ENSMUST00000196398 9021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
Nkx3-1P97436 Gm45876-201ENSMUST00000212698 2709 ntBASIC5.68□□□□□ -1.5
Nkx3-1P97436 Olfr358-201ENSMUST00000100146 1059 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Nkx3-1P97436 Gm25346-201ENSMUST00000104509 128 ntBASIC5.68□□□□□ -1.5
Nkx3-1P97436 Gstm7-202ENSMUST00000106687 743 ntTSL 3 BASIC5.68□□□□□ -1.5
Nkx3-1P97436 Gm21103-201ENSMUST00000112737 984 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms