Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm26981-201ENSMUST00000182453 3169 ntTSL 5 BASIC7.69□□□□□ -1.18
Traf1P39428 Gm42674-201ENSMUST00000107330 446 ntAPPRIS P1 TSL 3 BASIC7.69□□□□□ -1.18
Traf1P39428 Sms-ps-201ENSMUST00000121773 1101 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Gm14092-201ENSMUST00000136794 617 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Tbata-208ENSMUST00000143207 982 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Sumo2-207ENSMUST00000153892 1051 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Gm25550-201ENSMUST00000158079 128 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Gm20530-201ENSMUST00000174261 254 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Gm23968-201ENSMUST00000175047 125 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Mir7046-201ENSMUST00000183435 66 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Gm38237-201ENSMUST00000193366 376 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Gm43383-201ENSMUST00000195981 469 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Gm44253-201ENSMUST00000203387 628 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Usf2-ps1-201ENSMUST00000206657 311 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Gm5324-201ENSMUST00000208115 476 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Gm46364-201ENSMUST00000218548 319 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Emc2-201ENSMUST00000022962 1231 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Il15ra-210ENSMUST00000128156 1624 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Olfr1500-207ENSMUST00000219674 2287 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
Traf1P39428 Gm4927-201ENSMUST00000219548 1318 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Smc1a-201ENSMUST00000045312 4691 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Gm12703-201ENSMUST00000145411 2039 ntTSL 2 BASIC7.69□□□□□ -1.18
Traf1P39428 Nemf-201ENSMUST00000021368 4732 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
Traf1P39428 Cd244-201ENSMUST00000004829 3760 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Ktn1-202ENSMUST00000185343 3846 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
Traf1P39428 Ktn1-205ENSMUST00000186627 3840 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
Traf1P39428 Ktn1-213ENSMUST00000188330 3819 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
Traf1P39428 Gm10555-201ENSMUST00000193178 1791 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Efcab14-201ENSMUST00000074425 4300 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Ndnf-201ENSMUST00000054351 10101 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Slc4a4-203ENSMUST00000130041 3335 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Fmr1-203ENSMUST00000114654 4061 ntAPPRIS ALT1 TSL 5 BASIC7.68□□□□□ -1.18
Traf1P39428 Sptlc3-202ENSMUST00000110083 2227 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Eif4a2-203ENSMUST00000115341 1875 ntAPPRIS ALT1 TSL 5 BASIC7.68□□□□□ -1.18
Traf1P39428 Gm45949-201ENSMUST00000221550 1895 ntTSL 5 BASIC7.68□□□□□ -1.18
Traf1P39428 Gm28320-201ENSMUST00000187777 2273 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Zfp78-202ENSMUST00000108559 1539 ntAPPRIS P4 TSL 2 BASIC7.68□□□□□ -1.18
Traf1P39428 Gm43029-201ENSMUST00000201829 1535 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Grm8-202ENSMUST00000115323 3856 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 2610044O15Rik8-202ENSMUST00000186619 2337 ntAPPRIS P1 TSL 2 BASIC7.68□□□□□ -1.18
Traf1P39428 Pln-201ENSMUST00000046221 2334 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Mlh3-203ENSMUST00000220854 4699 ntAPPRIS ALT2 TSL 5 BASIC7.68□□□□□ -1.18
Traf1P39428 Gm38128-201ENSMUST00000192085 3250 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Plch1-206ENSMUST00000159676 6560 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Fam196b-201ENSMUST00000093192 5031 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Gm11987-201ENSMUST00000118524 381 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Gm13930-201ENSMUST00000118569 368 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Gm11504-201ENSMUST00000120211 173 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Rps12-ps20-201ENSMUST00000121168 402 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Gm14272-201ENSMUST00000133525 484 ntTSL 3 BASIC7.68□□□□□ -1.18
Traf1P39428 Nudt12os-202ENSMUST00000152750 849 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Gm12148-201ENSMUST00000153791 292 ntTSL 3 BASIC7.68□□□□□ -1.18
Traf1P39428 Gm24781-201ENSMUST00000157636 117 ntBASIC7.68□□□□□ -1.18
Traf1P39428 B230118H07Rik-209ENSMUST00000160722 931 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Rps12-ps23-201ENSMUST00000179414 402 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Gtpbp4-ps3-201ENSMUST00000184093 136 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Cd68-201ENSMUST00000018918 1230 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Gm43867-201ENSMUST00000203860 525 ntBASIC7.68□□□□□ -1.18
Traf1P39428 4930518I17Rik-201ENSMUST00000203902 656 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Pttg1-202ENSMUST00000020687 741 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Gm2788-207ENSMUST00000211055 1078 ntTSL 5 BASIC7.68□□□□□ -1.18
Traf1P39428 Tespa1-202ENSMUST00000217702 1102 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 AC154573.2-201ENSMUST00000224174 378 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Orm1-201ENSMUST00000030044 775 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Orm2-201ENSMUST00000075341 775 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Gm14935-201ENSMUST00000121528 1708 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Gm37216-201ENSMUST00000193817 3478 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Slc17a4-202ENSMUST00000110407 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Olfr1410-203ENSMUST00000217316 7927 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
Traf1P39428 Gm30931-202ENSMUST00000211698 1320 ntTSL 3 BASIC7.68□□□□□ -1.18
Traf1P39428 Gm136-201ENSMUST00000095129 1311 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Zfp934-209ENSMUST00000222746 2206 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Ncoa7-212ENSMUST00000217644 2256 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Trim43b-202ENSMUST00000189557 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 E330034G19Rik-204ENSMUST00000162224 1350 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Gm44843-201ENSMUST00000208320 1396 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Gm30849-201ENSMUST00000214503 1379 ntTSL 5 BASIC7.68□□□□□ -1.18
Traf1P39428 Otc-201ENSMUST00000049910 2319 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 Gm42930-201ENSMUST00000200872 3260 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Ctsr-201ENSMUST00000021889 1414 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
Traf1P39428 AC122024.1-201ENSMUST00000219276 4850 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Gm18879-201ENSMUST00000221187 1537 ntBASIC7.68□□□□□ -1.18
Traf1P39428 Gria3-202ENSMUST00000115103 3081 ntAPPRIS ALT1 TSL 5 BASIC7.67□□□□□ -1.18
Traf1P39428 Gm30329-201ENSMUST00000211572 3077 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
Traf1P39428 Clasp1-202ENSMUST00000070989 7767 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
Traf1P39428 Vmn2r-ps139-201ENSMUST00000190764 2057 ntBASIC7.67□□□□□ -1.18
Traf1P39428 Slc30a7-201ENSMUST00000067485 9020 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
Traf1P39428 Hsp90aa1-201ENSMUST00000021698 2852 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
Traf1P39428 Scn9a-203ENSMUST00000112354 6471 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
Traf1P39428 Atm-201ENSMUST00000118282 10006 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
Traf1P39428 Gm37429-201ENSMUST00000193807 1799 ntBASIC7.67□□□□□ -1.18
Traf1P39428 Mir708-201ENSMUST00000102189 109 ntBASIC7.67□□□□□ -1.18
Traf1P39428 Sirpb1c-205ENSMUST00000108354 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
Traf1P39428 Gm12439-201ENSMUST00000117162 365 ntBASIC7.67□□□□□ -1.18
Traf1P39428 Gm14733-201ENSMUST00000117680 133 ntBASIC7.67□□□□□ -1.18
Traf1P39428 Gm4911-201ENSMUST00000119388 945 ntBASIC7.67□□□□□ -1.18
Traf1P39428 Gm12101-201ENSMUST00000121590 390 ntBASIC7.67□□□□□ -1.18
Traf1P39428 Gm2986-201ENSMUST00000121603 382 ntBASIC7.67□□□□□ -1.18
Traf1P39428 4930583P06Rik-201ENSMUST00000136658 706 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
Traf1P39428 Speer1-201ENSMUST00000172106 1123 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
Retrieved 100 of 76,532 protein–RNA pairs in 99.4 ms