Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Foxp2-209ENSMUST00000131414 1381 ntTSL 5 BASIC7.71□□□□□ -1.17
Traf1P39428 Dsg1b-201ENSMUST00000076737 3965 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
Traf1P39428 A330023F24Rik-202ENSMUST00000181273 4217 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
Traf1P39428 AC129085.2-201ENSMUST00000223763 2800 ntBASIC7.71□□□□□ -1.17
Traf1P39428 Ccr9-201ENSMUST00000111454 2620 ntTSL 5 BASIC7.71□□□□□ -1.17
Traf1P39428 Sult1c2-201ENSMUST00000023886 1846 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
Traf1P39428 Gm15348-201ENSMUST00000151188 3655 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
Traf1P39428 Wdr66-207ENSMUST00000170536 3679 ntTSL 5 BASIC7.71□□□□□ -1.17
Traf1P39428 Mef2c-203ENSMUST00000185052 3556 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
Traf1P39428 Rnu11-201ENSMUST00000104135 134 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps10-201ENSMUST00000117447 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps16-201ENSMUST00000118529 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Gm15158-201ENSMUST00000120577 570 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Gm14796-201ENSMUST00000121216 959 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps19-ps14-201ENSMUST00000121832 269 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Gm4997-201ENSMUST00000154056 360 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Gm12963-203ENSMUST00000156271 388 ntTSL 5 BASIC7.71□□□□□ -1.18
Traf1P39428 Gm26353-201ENSMUST00000158224 255 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Gm25660-201ENSMUST00000158470 104 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Pde1c-208ENSMUST00000170774 2132 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
Traf1P39428 Vmn1r-ps78-201ENSMUST00000178185 924 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps13-201ENSMUST00000178365 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps11-201ENSMUST00000178427 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps12-201ENSMUST00000179020 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps17-201ENSMUST00000179067 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps6-201ENSMUST00000179239 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps14-201ENSMUST00000179356 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps18-201ENSMUST00000179420 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Vmn1r-ps76-201ENSMUST00000179492 924 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps15-201ENSMUST00000179567 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Gm26509-201ENSMUST00000180947 948 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12l1-201ENSMUST00000183090 399 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Mir6989-201ENSMUST00000184812 65 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Gm7270-201ENSMUST00000195818 1128 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Gm19088-201ENSMUST00000198800 566 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rps12-ps4-201ENSMUST00000208689 397 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Olfr976-202ENSMUST00000213171 2998 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
Traf1P39428 Gm30933-201ENSMUST00000217174 381 ntTSL 2 BASIC7.71□□□□□ -1.18
Traf1P39428 Gm6563-201ENSMUST00000056396 869 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
Traf1P39428 Olfr376-201ENSMUST00000078952 1210 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.18
Traf1P39428 Zscan18-201ENSMUST00000046245 3626 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
Traf1P39428 AC138765.2-202ENSMUST00000228418 3435 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Gm3278-201ENSMUST00000164459 1500 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
Traf1P39428 Gabrb2-205ENSMUST00000192403 1539 ntAPPRIS ALT1 TSL 1 (best) BASIC7.71□□□□□ -1.18
Traf1P39428 Gm5512-202ENSMUST00000220222 1522 ntBASIC7.71□□□□□ -1.18
Traf1P39428 4930516K23Rik-201ENSMUST00000074064 6133 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
Traf1P39428 Gm26816-201ENSMUST00000180679 2448 ntTSL 5 BASIC7.71□□□□□ -1.18
Traf1P39428 Gm20121-201ENSMUST00000198547 1594 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Rlim-201ENSMUST00000070705 7429 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
Traf1P39428 Gm38277-201ENSMUST00000195172 1367 ntBASIC7.71□□□□□ -1.18
Traf1P39428 Olfr770-203ENSMUST00000204250 1644 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
Traf1P39428 Prkaa1-201ENSMUST00000051186 4655 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Slc12a6-203ENSMUST00000110987 3722 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Top2a-201ENSMUST00000068031 5221 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Sytl2-207ENSMUST00000190837 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Rbfox1-201ENSMUST00000056416 4084 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Gm13265-201ENSMUST00000118090 421 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Gm8312-201ENSMUST00000119380 618 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Rps13-ps6-201ENSMUST00000120038 428 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Gm12181-201ENSMUST00000121448 531 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Gm21990-201ENSMUST00000124692 383 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Gm13480-201ENSMUST00000125095 1000 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Gm22428-201ENSMUST00000158554 132 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Esd-ps-201ENSMUST00000170684 847 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Gm20691-201ENSMUST00000176889 333 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Gm21304-201ENSMUST00000180568 1185 ntAPPRIS P1 TSL 3 BASIC7.7□□□□□ -1.18
Traf1P39428 Gm21293-202ENSMUST00000180664 1185 ntAPPRIS P1 TSL 3 BASIC7.7□□□□□ -1.18
Traf1P39428 Gm21312-203ENSMUST00000181239 1185 ntAPPRIS ALT2 TSL 3 BASIC7.7□□□□□ -1.18
Traf1P39428 Gm20765-203ENSMUST00000181707 1185 ntAPPRIS ALT2 TSL 3 BASIC7.7□□□□□ -1.18
Traf1P39428 Gm27010-201ENSMUST00000182727 863 ntTSL 3 BASIC7.7□□□□□ -1.18
Traf1P39428 2310043O21Rik-201ENSMUST00000185323 622 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Gm18447-201ENSMUST00000187501 307 ntBASIC7.7□□□□□ -1.18
Traf1P39428 4930590H14Rik-201ENSMUST00000193999 551 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Fxyd4-204ENSMUST00000203433 670 ntTSL 3 BASIC7.7□□□□□ -1.18
Traf1P39428 Nkain2-204ENSMUST00000218645 703 ntTSL 5 BASIC7.7□□□□□ -1.18
Traf1P39428 Olfr930-201ENSMUST00000058789 1101 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
Traf1P39428 Gm9961-201ENSMUST00000068397 547 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Zfp865-202ENSMUST00000076791 1129 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Golph3l-207ENSMUST00000177390 2836 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Adam21-201ENSMUST00000008582 2911 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Pard3-203ENSMUST00000108752 3497 ntTSL 5 BASIC7.7□□□□□ -1.18
Traf1P39428 AC153501.1-201ENSMUST00000218156 1860 ntTSL 5 BASIC7.7□□□□□ -1.18
Traf1P39428 Brwd3-205ENSMUST00000150434 11619 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
Traf1P39428 6330410L21Rik-201ENSMUST00000199846 3871 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Trrap-202ENSMUST00000094120 12456 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
Traf1P39428 Ccdc186-201ENSMUST00000076085 2754 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Gm4806-201ENSMUST00000222704 1690 ntBASIC7.7□□□□□ -1.18
Traf1P39428 Kcnj1-202ENSMUST00000172015 3075 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
Traf1P39428 Fap-209ENSMUST00000174448 2271 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
Traf1P39428 Mdga2-210ENSMUST00000222167 2871 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Mdga2-213ENSMUST00000223141 2850 ntTSL 2 BASIC7.69□□□□□ -1.18
Traf1P39428 Sema6d-205ENSMUST00000103238 3165 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 4921511C10Rik-201ENSMUST00000200412 1463 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Fbxw19-201ENSMUST00000076617 1483 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 A130050O07Rik-201ENSMUST00000191963 3023 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Ttc33-201ENSMUST00000022751 1832 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Gm39214-201ENSMUST00000210912 1542 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
Traf1P39428 Dcaf1-203ENSMUST00000161758 5539 ntTSL 5 BASIC7.69□□□□□ -1.18
Traf1P39428 Gm37755-201ENSMUST00000195880 2179 ntBASIC7.69□□□□□ -1.18
Traf1P39428 Gm44275-201ENSMUST00000203442 2519 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms