Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Rasef-202ENSMUST00000102837 5158 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Plch1-208ENSMUST00000160638 6271 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Gm28999-201ENSMUST00000188063 1498 ntTSL 5 BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Gm28393-201ENSMUST00000191261 1498 ntTSL 5 BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Cd44-205ENSMUST00000111191 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Gm36529-201ENSMUST00000222495 1529 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Tmem87a-203ENSMUST00000110729 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 BB031773-201ENSMUST00000148892 3655 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Gm45512-201ENSMUST00000210432 1553 ntBASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Med23-201ENSMUST00000020159 4798 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 7420700N18Rik-201ENSMUST00000209524 1644 ntTSL 5 BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Cpb1-201ENSMUST00000011607 2718 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 3830408C21Rik-202ENSMUST00000223895 1689 ntBASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Cxcr6-201ENSMUST00000049810 1897 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Gimap6-202ENSMUST00000119315 3179 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Vmn1r5-203ENSMUST00000228276 3188 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
Trim47Q8C0E3 Dis3l-202ENSMUST00000113890 3224 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm14661-201ENSMUST00000152669 2051 ntTSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm38302-201ENSMUST00000191676 2076 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Thg1l-202ENSMUST00000109254 2202 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 4921528I07Rik-202ENSMUST00000213446 3798 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 AC158596.1-201ENSMUST00000217315 2265 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm20547-202ENSMUST00000146299 3893 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Cep170-215ENSMUST00000195717 6967 ntAPPRIS P2 TSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Vtcn1-201ENSMUST00000054791 2622 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Zfp946-201ENSMUST00000088763 2935 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Grhl1-201ENSMUST00000020985 3070 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Mcm4-201ENSMUST00000023353 3589 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm15001-201ENSMUST00000117657 795 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm11810-201ENSMUST00000118311 333 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm13038-201ENSMUST00000119886 459 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm23867-201ENSMUST00000122649 274 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm24893-201ENSMUST00000122745 369 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm13480-201ENSMUST00000125095 1000 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm15092-201ENSMUST00000138467 574 ntTSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm11816-202ENSMUST00000149848 714 ntTSL 2 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm15392-201ENSMUST00000152863 778 ntTSL 3 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 4930551L18Rik-201ENSMUST00000156086 700 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm26024-201ENSMUST00000158657 322 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm23007-201ENSMUST00000158951 177 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm7418-201ENSMUST00000162120 801 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm17047-201ENSMUST00000167709 430 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm21754-201ENSMUST00000177550 479 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm24923-201ENSMUST00000178201 88 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Ranbp2-ps3-201ENSMUST00000183549 388 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Mlip-214ENSMUST00000185039 1295 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm28214-201ENSMUST00000185663 420 ntTSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm4856-201ENSMUST00000192696 1091 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm7804-202ENSMUST00000194187 854 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm43387-201ENSMUST00000196896 1066 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm43148-201ENSMUST00000198237 520 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 D030025E07Rik-204ENSMUST00000198275 653 ntTSL 3 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Hcfc1r1-ps1-201ENSMUST00000198911 346 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Spink8-202ENSMUST00000198988 768 ntAPPRIS P2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm43558-201ENSMUST00000200155 210 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm44724-202ENSMUST00000208251 531 ntTSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Olfr1452-ps1-201ENSMUST00000208396 925 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm44724-203ENSMUST00000208430 998 ntTSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Arl2bp-203ENSMUST00000211858 318 ntTSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm31036-201ENSMUST00000212925 521 ntTSL 3 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 AC159462.2-201ENSMUST00000217559 463 ntTSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 B230303A05Rik-202ENSMUST00000220728 478 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 AC154806.3-201ENSMUST00000227376 439 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 AC154806.4-201ENSMUST00000227406 439 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Rhox11-201ENSMUST00000054147 811 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Odf3l1-201ENSMUST00000055036 1080 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Olfr788-201ENSMUST00000056961 936 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Olfr299-201ENSMUST00000057734 993 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm10717-201ENSMUST00000075573 684 ntTSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm20900-201ENSMUST00000078729 472 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm26064-201ENSMUST00000083381 109 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 4930402F06Rik-202ENSMUST00000113010 1372 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 4930512H18Rik-201ENSMUST00000133752 1493 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 A530053G22Rik-201ENSMUST00000060147 1526 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 AC163354.1-201ENSMUST00000220620 1630 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Rapgef6-210ENSMUST00000207429 5164 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm28906-201ENSMUST00000191371 1779 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm19176-201ENSMUST00000222149 1831 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm6602-201ENSMUST00000198910 1927 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm13262-201ENSMUST00000149014 2022 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 AC159301.1-202ENSMUST00000225860 2133 ntBASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Slc24a2-202ENSMUST00000107155 2171 ntTSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Gm14244-201ENSMUST00000155688 2410 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Psma2-201ENSMUST00000170836 2911 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Tmem30c-201ENSMUST00000023434 2973 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Brd8-202ENSMUST00000097626 3005 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Klhl13-202ENSMUST00000115313 3251 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
Trim47Q8C0E3 Siglec1-201ENSMUST00000028794 6387 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Far1-201ENSMUST00000033018 4962 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Tgm3-201ENSMUST00000110299 4135 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Prdm10-205ENSMUST00000215847 3519 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Gm10637-202ENSMUST00000184702 3233 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Ankrd55-203ENSMUST00000165593 2749 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Cacna1c-207ENSMUST00000186889 13162 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Svil-215ENSMUST00000210707 7633 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Trappc13-201ENSMUST00000022224 2342 ntAPPRIS P4 TSL 1 (best) BASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Gm42678-201ENSMUST00000197163 2221 ntBASIC8.41□□□□□ -1.06
Trim47Q8C0E3 AC105958.1-201ENSMUST00000214783 2144 ntBASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Olfr622-204ENSMUST00000216570 2149 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Trim47Q8C0E3 Gm18632-201ENSMUST00000222597 2087 ntBASIC8.41□□□□□ -1.06
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms