Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm5949-201ENSMUST00000213468 1421 ntBASIC10.02□□□□□ -0.8
Cux1P53564 AC135083.2-201ENSMUST00000228599 1456 ntBASIC10.02□□□□□ -0.8
Cux1P53564 F930017D23Rik-201ENSMUST00000099888 1836 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
Cux1P53564 Gm42636-201ENSMUST00000197174 2239 ntBASIC10.02□□□□□ -0.8
Cux1P53564 Dpy19l3-201ENSMUST00000051377 8006 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cux1P53564 Lpin1-204ENSMUST00000221230 4114 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cux1P53564 Nfasc-202ENSMUST00000094569 9739 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cux1P53564 Efl1-201ENSMUST00000039881 3610 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cux1P53564 Gm38124-201ENSMUST00000191710 2581 ntBASIC10.02□□□□□ -0.81
Cux1P53564 Olfr478-202ENSMUST00000210173 2477 ntAPPRIS P1 TSL 3 BASIC10.02□□□□□ -0.81
Cux1P53564 Gm17491-201ENSMUST00000180411 2311 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Cux1P53564 Gm4994-201ENSMUST00000118379 2187 ntBASIC10.02□□□□□ -0.81
Cux1P53564 Gm13078-201ENSMUST00000078695 2106 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
Cux1P53564 Olfr1189-202ENSMUST00000213679 1983 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
Cux1P53564 Mast4-212ENSMUST00000171791 7647 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.81
Cux1P53564 Ganab-201ENSMUST00000096246 3862 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cux1P53564 Gm13489-201ENSMUST00000121234 971 ntBASIC10.02□□□□□ -0.81
Cux1P53564 Gm15879-202ENSMUST00000150906 565 ntTSL 2 BASIC10.02□□□□□ -0.81
Cux1P53564 Gm19840-201ENSMUST00000169624 882 ntBASIC10.02□□□□□ -0.81
Cux1P53564 Mir3097-201ENSMUST00000175356 67 ntBASIC10.02□□□□□ -0.81
Cux1P53564 Mir7020-201ENSMUST00000183787 70 ntBASIC10.02□□□□□ -0.81
Cux1P53564 Gm28934-201ENSMUST00000186491 346 ntBASIC10.02□□□□□ -0.81
Cux1P53564 Ighv5-3-201ENSMUST00000195336 322 ntBASIC10.02□□□□□ -0.81
Cux1P53564 2200002A13Rik-201ENSMUST00000206633 709 ntBASIC10.02□□□□□ -0.81
Cux1P53564 Gm10688-201ENSMUST00000214985 520 ntBASIC10.02□□□□□ -0.81
Cux1P53564 Ppp1r36-204ENSMUST00000220187 504 ntTSL 3 BASIC10.02□□□□□ -0.81
Cux1P53564 4930529N20Rik-201ENSMUST00000220538 639 ntTSL 3 BASIC10.02□□□□□ -0.81
Cux1P53564 Gm34557-201ENSMUST00000223115 375 ntTSL 3 BASIC10.02□□□□□ -0.81
Cux1P53564 4930550C14Rik-201ENSMUST00000005262 1237 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
Cux1P53564 Olfr1132-201ENSMUST00000090711 927 ntAPPRIS P1 BASIC10.02□□□□□ -0.81
Cux1P53564 March1-208ENSMUST00000110259 3181 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Cux1P53564 Pnisr-202ENSMUST00000098238 4407 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
Cux1P53564 Cflar-205ENSMUST00000114313 6572 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm10862-201ENSMUST00000193956 3350 ntBASIC10.01□□□□□ -0.81
Cux1P53564 CT009480.2-201ENSMUST00000225152 3369 ntBASIC10.01□□□□□ -0.81
Cux1P53564 Myof-201ENSMUST00000041475 6902 ntAPPRIS P2 TSL 2 BASIC10.01□□□□□ -0.81
Cux1P53564 Rag1-201ENSMUST00000078494 6608 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 AW554918-208ENSMUST00000165400 5351 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Cux1P53564 AW554918-202ENSMUST00000097643 5351 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Cux1P53564 Atp8b5-202ENSMUST00000102953 2609 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Zc3h12c-202ENSMUST00000213645 6764 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Cux1P53564 Olfr1564-204ENSMUST00000213751 5418 ntAPPRIS ALT1 TSL 5 BASIC10.01□□□□□ -0.81
Cux1P53564 F13b-201ENSMUST00000027615 2379 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Slc6a19-201ENSMUST00000022048 3936 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Smt3h1-ps-201ENSMUST00000117126 280 ntBASIC10.01□□□□□ -0.81
Cux1P53564 Gm8855-201ENSMUST00000118888 878 ntBASIC10.01□□□□□ -0.81
Cux1P53564 Gm14237-201ENSMUST00000122080 430 ntBASIC10.01□□□□□ -0.81
Cux1P53564 1700047A11Rik-201ENSMUST00000144750 427 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm8582-201ENSMUST00000164061 789 ntBASIC10.01□□□□□ -0.81
Cux1P53564 Rnf32-211ENSMUST00000168460 1107 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm20738-201ENSMUST00000177666 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm20823-201ENSMUST00000179949 1231 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm20865-202ENSMUST00000181163 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm27024-201ENSMUST00000182561 755 ntBASIC10.01□□□□□ -0.81
Cux1P53564 Gm27849-201ENSMUST00000183673 125 ntBASIC10.01□□□□□ -0.81
Cux1P53564 Gm29049-201ENSMUST00000185705 1224 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm20816-202ENSMUST00000187846 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm20809-202ENSMUST00000187943 1224 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm21728-201ENSMUST00000188442 695 ntBASIC10.01□□□□□ -0.81
Cux1P53564 Gm21889-201ENSMUST00000188487 695 ntBASIC10.01□□□□□ -0.81
Cux1P53564 Gm20932-201ENSMUST00000189115 694 ntBASIC10.01□□□□□ -0.81
Cux1P53564 Gm21920-201ENSMUST00000190042 695 ntBASIC10.01□□□□□ -0.81
Cux1P53564 Gm28171-201ENSMUST00000190100 1226 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm20867-202ENSMUST00000190987 1224 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm43945-201ENSMUST00000203595 754 ntBASIC10.01□□□□□ -0.81
Cux1P53564 AC140288.1-201ENSMUST00000226329 503 ntBASIC10.01□□□□□ -0.81
Cux1P53564 1700034E13Rik-201ENSMUST00000091904 439 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Fam183b-202ENSMUST00000094156 567 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Zkscan2-201ENSMUST00000042470 7831 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Sla-201ENSMUST00000100572 2626 ntAPPRIS P3 TSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 C730027H18Rik-202ENSMUST00000219822 3268 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Cux1P53564 Gm13403-201ENSMUST00000127936 3651 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Vwa5a-202ENSMUST00000118144 3502 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Cyb5r2-201ENSMUST00000052438 2772 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Dusp18-201ENSMUST00000055931 4632 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Anapc10-203ENSMUST00000210812 4591 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Olfr686-204ENSMUST00000216613 2613 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
Cux1P53564 Hsf2-201ENSMUST00000079833 2604 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Dclk1-208ENSMUST00000198437 4315 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Acox1-202ENSMUST00000072948 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Gm18878-201ENSMUST00000223071 1443 ntBASIC10□□□□□ -0.81
Cux1P53564 CT025566.1-202ENSMUST00000224800 2511 ntBASIC10□□□□□ -0.81
Cux1P53564 Slc41a2-201ENSMUST00000039956 4742 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Zkscan7-201ENSMUST00000063980 4722 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Hmgn3-203ENSMUST00000185315 1391 ntAPPRIS ALT2 TSL 2 BASIC10□□□□□ -0.81
Cux1P53564 Phactr4-202ENSMUST00000084249 2349 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Cux1P53564 Gm13090-201ENSMUST00000105667 746 ntAPPRIS P1 TSL 3 BASIC10□□□□□ -0.81
Cux1P53564 Tmem216-203ENSMUST00000123788 935 ntAPPRIS P1 TSL 3 BASIC10□□□□□ -0.81
Cux1P53564 Snora47-201ENSMUST00000157483 138 ntBASIC10□□□□□ -0.81
Cux1P53564 Gm42626-201ENSMUST00000196866 1148 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Gm36231-201ENSMUST00000211183 217 ntTSL 5 BASIC10□□□□□ -0.81
Cux1P53564 Gm46223-201ENSMUST00000215196 675 ntBASIC10□□□□□ -0.81
Cux1P53564 Akr1c13-201ENSMUST00000021634 1262 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Fndc3b-204ENSMUST00000195008 6886 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Slc15a2-208ENSMUST00000165531 2158 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Cux1P53564 Gm38028-201ENSMUST00000193309 2169 ntTSL 5 BASIC10□□□□□ -0.81
Cux1P53564 Fbxw11-201ENSMUST00000076383 4019 ntTSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 Gm10855-201ENSMUST00000100426 2541 ntBASIC10□□□□□ -0.81
Cux1P53564 Tmem161b-201ENSMUST00000057495 2857 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Cux1P53564 1520401A03Rik-204ENSMUST00000178006 3726 ntAPPRIS ALT2 TSL 2 BASIC10□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 116.7 ms