Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn11aQ9R053 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Scn11aQ9R053 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scn11aQ9R053 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scn11aQ9R053 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Scn11aQ9R053 Timm23-208ENSMUST00000226683 750 ntBASIC21.75■■□□□ 1.07
Scn11aQ9R053 Otx2os1-204ENSMUST00000227221 751 ntBASIC21.75■■□□□ 1.07
Scn11aQ9R053 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Scn11aQ9R053 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scn11aQ9R053 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Scn11aQ9R053 AC121961.1-201ENSMUST00000218594 1779 ntBASIC21.75■■□□□ 1.07
Scn11aQ9R053 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scn11aQ9R053 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scn11aQ9R053 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn11aQ9R053 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn11aQ9R053 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn11aQ9R053 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Scn11aQ9R053 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
Scn11aQ9R053 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn11aQ9R053 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC21.74■■□□□ 1.07
Scn11aQ9R053 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn11aQ9R053 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC21.74■■□□□ 1.07
Scn11aQ9R053 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Gm42922-201ENSMUST00000195887 2078 ntBASIC21.73■■□□□ 1.07
Scn11aQ9R053 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn11aQ9R053 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Scn11aQ9R053 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn11aQ9R053 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn11aQ9R053 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn11aQ9R053 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Scn11aQ9R053 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn11aQ9R053 Tgds-204ENSMUST00000228543 1594 ntBASIC21.72■■□□□ 1.07
Scn11aQ9R053 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC21.72■■□□□ 1.07
Scn11aQ9R053 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
Scn11aQ9R053 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn11aQ9R053 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn11aQ9R053 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn11aQ9R053 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn11aQ9R053 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
Scn11aQ9R053 AC124581.1-201ENSMUST00000225416 1399 ntBASIC21.71■■□□□ 1.07
Scn11aQ9R053 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn11aQ9R053 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scn11aQ9R053 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC21.7■■□□□ 1.06
Scn11aQ9R053 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Scn11aQ9R053 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC21.7■■□□□ 1.06
Scn11aQ9R053 Gm7712-202ENSMUST00000222331 1510 ntBASIC21.7■■□□□ 1.06
Scn11aQ9R053 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scn11aQ9R053 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Scn11aQ9R053 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn11aQ9R053 AC108858.1-201ENSMUST00000228461 1498 ntBASIC21.69■■□□□ 1.06
Scn11aQ9R053 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn11aQ9R053 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Scn11aQ9R053 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn11aQ9R053 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn11aQ9R053 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn11aQ9R053 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn11aQ9R053 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn11aQ9R053 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scn11aQ9R053 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Scn11aQ9R053 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scn11aQ9R053 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
Scn11aQ9R053 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Scn11aQ9R053 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Scn11aQ9R053 Odf3b-204ENSMUST00000227834 930 ntBASIC21.68■■□□□ 1.06
Scn11aQ9R053 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scn11aQ9R053 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scn11aQ9R053 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scn11aQ9R053 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Scn11aQ9R053 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scn11aQ9R053 Gm14464-201ENSMUST00000119658 1254 ntBASIC21.67■■□□□ 1.06
Scn11aQ9R053 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC21.67■■□□□ 1.06
Scn11aQ9R053 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scn11aQ9R053 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scn11aQ9R053 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Scn11aQ9R053 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC21.66■■□□□ 1.06
Scn11aQ9R053 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Gm43231-201ENSMUST00000202960 2258 ntBASIC21.66■■□□□ 1.06
Scn11aQ9R053 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scn11aQ9R053 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Scn11aQ9R053 Gm7889-201ENSMUST00000185591 958 ntBASIC21.66■■□□□ 1.06
Scn11aQ9R053 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms