Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Gm37179-201ENSMUST00000194862 823 ntBASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddx56Q9D0R4 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Tgds-204ENSMUST00000228543 1594 ntBASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Ddx56Q9D0R4 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 Grk6-206ENSMUST00000224995 2971 ntBASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Ddx56Q9D0R4 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Ddx56Q9D0R4 Mir5133-201ENSMUST00000174955 77 ntBASIC19.08■□□□□ 0.64
Ddx56Q9D0R4 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.08■□□□□ 0.64
Ddx56Q9D0R4 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddx56Q9D0R4 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddx56Q9D0R4 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Ddx56Q9D0R4 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddx56Q9D0R4 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddx56Q9D0R4 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Ddx56Q9D0R4 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddx56Q9D0R4 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Gm13148-201ENSMUST00000118892 745 ntBASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.07■□□□□ 0.64
Ddx56Q9D0R4 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddx56Q9D0R4 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddx56Q9D0R4 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.06■□□□□ 0.64
Ddx56Q9D0R4 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddx56Q9D0R4 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Ddx56Q9D0R4 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.06■□□□□ 0.64
Ddx56Q9D0R4 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Ddx56Q9D0R4 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Ddx56Q9D0R4 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Ddx56Q9D0R4 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.06■□□□□ 0.64
Ddx56Q9D0R4 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Gm12933-201ENSMUST00000120203 872 ntBASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Ddx56Q9D0R4 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms