Protein–RNA interactions for Protein: Q99PJ2

Trim8, Probable E3 ubiquitin-protein ligase TRIM8, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim8Q99PJ2 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim8Q99PJ2 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim8Q99PJ2 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.8■□□□□ 0.44
Trim8Q99PJ2 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
Trim8Q99PJ2 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim8Q99PJ2 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Gm26833-201ENSMUST00000180899 440 ntBASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Gm43017-201ENSMUST00000198296 752 ntBASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim8Q99PJ2 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim8Q99PJ2 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Trim8Q99PJ2 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Trim8Q99PJ2 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Trim8Q99PJ2 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim8Q99PJ2 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim8Q99PJ2 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim8Q99PJ2 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.77■□□□□ 0.43
Trim8Q99PJ2 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.76■□□□□ 0.43
Trim8Q99PJ2 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
Trim8Q99PJ2 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim8Q99PJ2 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.75■□□□□ 0.43
Trim8Q99PJ2 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim8Q99PJ2 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.75■□□□□ 0.43
Trim8Q99PJ2 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms