Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Mir2861-201ENSMUST00000175539 82 ntBASIC19.26■□□□□ 0.67
Clp1Q99LI9 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Gm45058-201ENSMUST00000205810 766 ntBASIC19.26■□□□□ 0.67
Clp1Q99LI9 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
Clp1Q99LI9 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Clp1Q99LI9 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.25■□□□□ 0.67
Clp1Q99LI9 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clp1Q99LI9 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC19.25■□□□□ 0.67
Clp1Q99LI9 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Clp1Q99LI9 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clp1Q99LI9 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Gm10013-201ENSMUST00000106074 672 ntBASIC19.24■□□□□ 0.67
Clp1Q99LI9 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Gm27463-201ENSMUST00000183569 57 ntBASIC19.24■□□□□ 0.67
Clp1Q99LI9 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC19.24■□□□□ 0.67
Clp1Q99LI9 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Clp1Q99LI9 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Clp1Q99LI9 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Clp1Q99LI9 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clp1Q99LI9 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clp1Q99LI9 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC19.23■□□□□ 0.67
Clp1Q99LI9 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clp1Q99LI9 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clp1Q99LI9 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Clp1Q99LI9 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clp1Q99LI9 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Gm6345-202ENSMUST00000180900 204 ntBASIC19.22■□□□□ 0.67
Clp1Q99LI9 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC19.22■□□□□ 0.67
Clp1Q99LI9 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clp1Q99LI9 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.21■□□□□ 0.67
Clp1Q99LI9 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.21■□□□□ 0.67
Clp1Q99LI9 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clp1Q99LI9 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.2■□□□□ 0.66
Clp1Q99LI9 AA414768-201ENSMUST00000121924 1257 ntBASIC19.2■□□□□ 0.66
Clp1Q99LI9 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Gm10517-202ENSMUST00000192970 758 ntBASIC19.2■□□□□ 0.66
Clp1Q99LI9 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Clp1Q99LI9 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms