Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Gm23634-201ENSMUST00000175071 91 ntBASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.16■□□□□ 0.5
Cstf1Q99LC2 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cstf1Q99LC2 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cstf1Q99LC2 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cstf1Q99LC2 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Cstf1Q99LC2 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cstf1Q99LC2 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC18.15■□□□□ 0.5
Cstf1Q99LC2 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cstf1Q99LC2 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC18.15■□□□□ 0.5
Cstf1Q99LC2 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cstf1Q99LC2 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cstf1Q99LC2 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.14■□□□□ 0.49
Cstf1Q99LC2 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cstf1Q99LC2 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cstf1Q99LC2 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cstf1Q99LC2 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cstf1Q99LC2 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
Cstf1Q99LC2 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.14■□□□□ 0.49
Cstf1Q99LC2 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cstf1Q99LC2 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cstf1Q99LC2 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Gm3375-201ENSMUST00000203929 796 ntBASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Zfp783-201ENSMUST00000095946 670 ntBASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
Cstf1Q99LC2 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Gm15375-201ENSMUST00000119510 849 ntBASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cstf1Q99LC2 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Gm10013-201ENSMUST00000106074 672 ntBASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Gm45560-201ENSMUST00000211492 1472 ntBASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cstf1Q99LC2 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Gm37292-201ENSMUST00000192062 758 ntBASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
Cstf1Q99LC2 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Cstf1Q99LC2 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Cstf1Q99LC2 AA414768-201ENSMUST00000121924 1257 ntBASIC18.09■□□□□ 0.49
Cstf1Q99LC2 Gm18959-201ENSMUST00000208954 655 ntBASIC18.09■□□□□ 0.49
Cstf1Q99LC2 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms