Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc28aQ8CEI3 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Gm26971-201ENSMUST00000182423 1072 ntBASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc28aQ8CEI3 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ccdc28aQ8CEI3 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Gm6139-201ENSMUST00000079261 882 ntBASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Ccdc28aQ8CEI3 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ccdc28aQ8CEI3 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc28aQ8CEI3 Gm27454-201ENSMUST00000185090 204 ntBASIC19.17■□□□□ 0.66
Ccdc28aQ8CEI3 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.17■□□□□ 0.66
Ccdc28aQ8CEI3 Appbp2os-202ENSMUST00000206972 447 ntBASIC19.17■□□□□ 0.66
Ccdc28aQ8CEI3 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Ccdc28aQ8CEI3 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc28aQ8CEI3 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc28aQ8CEI3 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ccdc28aQ8CEI3 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ccdc28aQ8CEI3 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ccdc28aQ8CEI3 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms