Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc28bQ8CEG5 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc28bQ8CEG5 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Gm12251-201ENSMUST00000117893 792 ntBASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
Ccdc28bQ8CEG5 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Flvcr1-202ENSMUST00000191946 1216 ntBASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Gm43137-201ENSMUST00000198052 594 ntBASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.93■□□□□ 0.46
Ccdc28bQ8CEG5 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ccdc28bQ8CEG5 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms