Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Six4Q61321 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Six4Q61321 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Six4Q61321 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Six4Q61321 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC18.39■□□□□ 0.53
Six4Q61321 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Six4Q61321 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Six4Q61321 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Six4Q61321 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.38■□□□□ 0.53
Six4Q61321 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Six4Q61321 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Six4Q61321 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.38■□□□□ 0.53
Six4Q61321 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
Six4Q61321 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC18.38■□□□□ 0.53
Six4Q61321 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.38■□□□□ 0.53
Six4Q61321 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Six4Q61321 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.38■□□□□ 0.53
Six4Q61321 Tgds-204ENSMUST00000228543 1594 ntBASIC18.38■□□□□ 0.53
Six4Q61321 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.37■□□□□ 0.53
Six4Q61321 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.37■□□□□ 0.53
Six4Q61321 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 Gm44544-201ENSMUST00000207052 1844 ntBASIC18.37■□□□□ 0.53
Six4Q61321 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Six4Q61321 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Six4Q61321 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six4Q61321 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Six4Q61321 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Six4Q61321 Gm12527-201ENSMUST00000117967 564 ntBASIC18.36■□□□□ 0.53
Six4Q61321 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six4Q61321 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.36■□□□□ 0.53
Six4Q61321 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six4Q61321 Gm20049-201ENSMUST00000219950 730 ntBASIC18.36■□□□□ 0.53
Six4Q61321 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six4Q61321 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six4Q61321 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six4Q61321 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six4Q61321 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Six4Q61321 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six4Q61321 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six4Q61321 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six4Q61321 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Six4Q61321 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six4Q61321 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Six4Q61321 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six4Q61321 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC18.35■□□□□ 0.53
Six4Q61321 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.35■□□□□ 0.53
Six4Q61321 Gm12896-201ENSMUST00000118430 226 ntBASIC18.35■□□□□ 0.53
Six4Q61321 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Six4Q61321 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Six4Q61321 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six4Q61321 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Six4Q61321 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Six4Q61321 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six4Q61321 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six4Q61321 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six4Q61321 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six4Q61321 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six4Q61321 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Six4Q61321 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six4Q61321 Gm2559-201ENSMUST00000201323 363 ntBASIC18.34■□□□□ 0.53
Six4Q61321 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six4Q61321 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six4Q61321 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six4Q61321 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.34■□□□□ 0.53
Six4Q61321 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Six4Q61321 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Six4Q61321 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Six4Q61321 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
Six4Q61321 Dio3-201ENSMUST00000097228 1449 ntBASIC18.33■□□□□ 0.53
Six4Q61321 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Six4Q61321 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Six4Q61321 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Six4Q61321 Gm27275-201ENSMUST00000184318 272 ntBASIC18.33■□□□□ 0.52
Six4Q61321 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.33■□□□□ 0.52
Six4Q61321 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Six4Q61321 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Six4Q61321 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.33■□□□□ 0.52
Six4Q61321 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Six4Q61321 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Six4Q61321 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 74.2 ms