Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CtcfQ61164 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CtcfQ61164 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CtcfQ61164 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CtcfQ61164 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CtcfQ61164 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
CtcfQ61164 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CtcfQ61164 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CtcfQ61164 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CtcfQ61164 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CtcfQ61164 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CtcfQ61164 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CtcfQ61164 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CtcfQ61164 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CtcfQ61164 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CtcfQ61164 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CtcfQ61164 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CtcfQ61164 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CtcfQ61164 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CtcfQ61164 Gm5828-201ENSMUST00000071842 1860 ntBASIC19.97■□□□□ 0.79
CtcfQ61164 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
CtcfQ61164 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CtcfQ61164 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC19.97■□□□□ 0.79
CtcfQ61164 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.97■□□□□ 0.79
CtcfQ61164 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CtcfQ61164 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CtcfQ61164 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.97■□□□□ 0.79
CtcfQ61164 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CtcfQ61164 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC19.97■□□□□ 0.79
CtcfQ61164 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CtcfQ61164 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CtcfQ61164 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
CtcfQ61164 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CtcfQ61164 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CtcfQ61164 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.96■□□□□ 0.79
CtcfQ61164 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CtcfQ61164 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.95■□□□□ 0.79
CtcfQ61164 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CtcfQ61164 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CtcfQ61164 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CtcfQ61164 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CtcfQ61164 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CtcfQ61164 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CtcfQ61164 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CtcfQ61164 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CtcfQ61164 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CtcfQ61164 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CtcfQ61164 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.94■□□□□ 0.78
CtcfQ61164 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CtcfQ61164 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.94■□□□□ 0.78
CtcfQ61164 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.94■□□□□ 0.78
CtcfQ61164 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.94■□□□□ 0.78
CtcfQ61164 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
CtcfQ61164 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CtcfQ61164 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CtcfQ61164 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC19.93■□□□□ 0.78
CtcfQ61164 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
CtcfQ61164 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC19.93■□□□□ 0.78
CtcfQ61164 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC19.93■□□□□ 0.78
CtcfQ61164 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CtcfQ61164 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CtcfQ61164 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CtcfQ61164 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CtcfQ61164 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 128.2 ms