Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Upf3bQ3ULL6 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Gm44672-201ENSMUST00000206944 1098 ntBASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Gm4968-201ENSMUST00000071458 858 ntBASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Upf3bQ3ULL6 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Gm43213-201ENSMUST00000151866 1790 ntBASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Gm44549-201ENSMUST00000208351 577 ntBASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Upf3bQ3ULL6 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Upf3bQ3ULL6 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 AC121961.1-201ENSMUST00000218594 1779 ntBASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3bQ3ULL6 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Gm38308-201ENSMUST00000194934 1809 ntBASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3bQ3ULL6 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Upf3bQ3ULL6 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Upf3bQ3ULL6 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.7
Upf3bQ3ULL6 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Upf3bQ3ULL6 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Upf3bQ3ULL6 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
Upf3bQ3ULL6 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Upf3bQ3ULL6 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC19.39■□□□□ 0.69
Upf3bQ3ULL6 Gm12441-201ENSMUST00000121806 588 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms