Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Zcchc6-207ENSMUST00000225576 2499 ntBASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Gm27801-201ENSMUST00000184174 223 ntBASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Gm43060-201ENSMUST00000200621 289 ntBASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ptchd3Q0EEE2 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ptchd3Q0EEE2 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ptchd3Q0EEE2 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ptchd3Q0EEE2 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ptchd3Q0EEE2 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.52■□□□□ 0.39
Ptchd3Q0EEE2 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ptchd3Q0EEE2 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.52■□□□□ 0.39
Ptchd3Q0EEE2 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC17.52■□□□□ 0.39
Ptchd3Q0EEE2 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ptchd3Q0EEE2 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Ptchd3Q0EEE2 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms