Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sox9Q04887 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sox9Q04887 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Sox9Q04887 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sox9Q04887 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.82■□□□□ 0.6
Sox9Q04887 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC18.82■□□□□ 0.6
Sox9Q04887 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sox9Q04887 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sox9Q04887 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sox9Q04887 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
Sox9Q04887 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Sox9Q04887 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.81■□□□□ 0.6
Sox9Q04887 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Sox9Q04887 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Sox9Q04887 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sox9Q04887 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
Sox9Q04887 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sox9Q04887 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.8■□□□□ 0.6
Sox9Q04887 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sox9Q04887 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC18.8■□□□□ 0.6
Sox9Q04887 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.8■□□□□ 0.6
Sox9Q04887 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sox9Q04887 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Sox9Q04887 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Sox9Q04887 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Sox9Q04887 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sox9Q04887 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Sox9Q04887 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sox9Q04887 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Sox9Q04887 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sox9Q04887 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC18.79■□□□□ 0.6
Sox9Q04887 Gm12085-201ENSMUST00000119263 940 ntBASIC18.79■□□□□ 0.6
Sox9Q04887 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.79■□□□□ 0.6
Sox9Q04887 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sox9Q04887 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC18.79■□□□□ 0.6
Sox9Q04887 Gm17807-201ENSMUST00000186869 298 ntBASIC18.79■□□□□ 0.6
Sox9Q04887 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Sox9Q04887 Gm8258-201ENSMUST00000055593 1449 ntBASIC18.79■□□□□ 0.6
Sox9Q04887 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sox9Q04887 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sox9Q04887 Hsf1-207ENSMUST00000228371 2102 ntBASIC18.79■□□□□ 0.6
Sox9Q04887 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sox9Q04887 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Sox9Q04887 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Sox9Q04887 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.78■□□□□ 0.6
Sox9Q04887 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sox9Q04887 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.78■□□□□ 0.6
Sox9Q04887 Umpk-ps-201ENSMUST00000211897 827 ntBASIC18.78■□□□□ 0.6
Sox9Q04887 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC18.78■□□□□ 0.6
Sox9Q04887 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sox9Q04887 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
Sox9Q04887 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Sox9Q04887 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sox9Q04887 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Sox9Q04887 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sox9Q04887 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sox9Q04887 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sox9Q04887 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.77■□□□□ 0.6
Sox9Q04887 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.77■□□□□ 0.6
Sox9Q04887 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Sox9Q04887 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sox9Q04887 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.77■□□□□ 0.59
Sox9Q04887 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Sox9Q04887 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Sox9Q04887 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.76■□□□□ 0.59
Sox9Q04887 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sox9Q04887 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.76■□□□□ 0.59
Sox9Q04887 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Sox9Q04887 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sox9Q04887 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sox9Q04887 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sox9Q04887 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sox9Q04887 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Sox9Q04887 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Sox9Q04887 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC18.76■□□□□ 0.59
Sox9Q04887 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sox9Q04887 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox9Q04887 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox9Q04887 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox9Q04887 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Sox9Q04887 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Sox9Q04887 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC18.75■□□□□ 0.59
Sox9Q04887 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Sox9Q04887 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.75■□□□□ 0.59
Sox9Q04887 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC18.75■□□□□ 0.59
Sox9Q04887 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox9Q04887 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Sox9Q04887 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox9Q04887 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sox9Q04887 Gm10616-201ENSMUST00000205285 2127 ntBASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms