Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig3P97386 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig3P97386 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lig3P97386 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lig3P97386 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Lig3P97386 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Lig3P97386 Gm11643-201ENSMUST00000119578 864 ntBASIC19.73■□□□□ 0.75
Lig3P97386 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC19.73■□□□□ 0.75
Lig3P97386 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Lig3P97386 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig3P97386 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig3P97386 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.73■□□□□ 0.75
Lig3P97386 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig3P97386 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig3P97386 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig3P97386 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Lig3P97386 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Lig3P97386 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lig3P97386 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig3P97386 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Lig3P97386 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Lig3P97386 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig3P97386 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Lig3P97386 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Lig3P97386 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig3P97386 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.72■□□□□ 0.75
Lig3P97386 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Lig3P97386 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig3P97386 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig3P97386 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lig3P97386 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.71■□□□□ 0.75
Lig3P97386 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Lig3P97386 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Gm15565-201ENSMUST00000118890 427 ntBASIC19.71■□□□□ 0.75
Lig3P97386 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Lig3P97386 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lig3P97386 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig3P97386 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Lig3P97386 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
Lig3P97386 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig3P97386 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig3P97386 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Lig3P97386 Gm42911-201ENSMUST00000199360 1630 ntBASIC19.7■□□□□ 0.74
Lig3P97386 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
Lig3P97386 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
Lig3P97386 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Lig3P97386 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.7■□□□□ 0.74
Lig3P97386 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Lig3P97386 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.7■□□□□ 0.74
Lig3P97386 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
Lig3P97386 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.7■□□□□ 0.74
Lig3P97386 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig3P97386 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Lig3P97386 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lig3P97386 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.7■□□□□ 0.74
Lig3P97386 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lig3P97386 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Lig3P97386 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig3P97386 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig3P97386 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.69■□□□□ 0.74
Lig3P97386 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.69■□□□□ 0.74
Lig3P97386 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lig3P97386 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
Lig3P97386 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.69■□□□□ 0.74
Lig3P97386 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig3P97386 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
Lig3P97386 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lig3P97386 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Lig3P97386 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.69■□□□□ 0.74
Lig3P97386 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig3P97386 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lig3P97386 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Lig3P97386 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.68■□□□□ 0.74
Lig3P97386 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.68■□□□□ 0.74
Lig3P97386 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.68■□□□□ 0.74
Lig3P97386 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms