Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Sox3P53784 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Sox3P53784 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
Sox3P53784 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.35■□□□□ 0.37
Sox3P53784 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Sox3P53784 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC17.35■□□□□ 0.37
Sox3P53784 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Sox3P53784 Gm10698-201ENSMUST00000182663 604 ntBASIC17.35■□□□□ 0.37
Sox3P53784 Gm2559-201ENSMUST00000201323 363 ntBASIC17.35■□□□□ 0.37
Sox3P53784 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Sox3P53784 Dio3-201ENSMUST00000097228 1449 ntBASIC17.35■□□□□ 0.37
Sox3P53784 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.35■□□□□ 0.37
Sox3P53784 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox3P53784 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox3P53784 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Sox3P53784 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox3P53784 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox3P53784 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Sox3P53784 Mir1199-201ENSMUST00000117015 119 ntBASIC17.34■□□□□ 0.37
Sox3P53784 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox3P53784 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox3P53784 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Sox3P53784 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.34■□□□□ 0.37
Sox3P53784 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Sox3P53784 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Sox3P53784 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox3P53784 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox3P53784 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Sox3P53784 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox3P53784 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sox3P53784 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sox3P53784 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sox3P53784 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Sox3P53784 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sox3P53784 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sox3P53784 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.33■□□□□ 0.36
Sox3P53784 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sox3P53784 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Sox3P53784 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sox3P53784 Gm10819-201ENSMUST00000099988 561 ntBASIC17.33■□□□□ 0.36
Sox3P53784 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sox3P53784 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sox3P53784 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Sox3P53784 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sox3P53784 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sox3P53784 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sox3P53784 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
Sox3P53784 Gm10231-201ENSMUST00000181584 441 ntBASIC17.32■□□□□ 0.36
Sox3P53784 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 Gm10175-202ENSMUST00000208752 441 ntBASIC17.32■□□□□ 0.36
Sox3P53784 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.32■□□□□ 0.36
Sox3P53784 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Sox3P53784 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
Sox3P53784 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox3P53784 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sox3P53784 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Sox3P53784 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sox3P53784 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sox3P53784 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sox3P53784 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Sox3P53784 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Sox3P53784 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC17.31■□□□□ 0.36
Sox3P53784 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.31■□□□□ 0.36
Sox3P53784 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Sox3P53784 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms