Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col3a1P08121 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col3a1P08121 Golph3-205ENSMUST00000228671 2842 ntBASIC21.86■■□□□ 1.09
Col3a1P08121 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col3a1P08121 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.85■■□□□ 1.09
Col3a1P08121 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col3a1P08121 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col3a1P08121 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC21.85■■□□□ 1.09
Col3a1P08121 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col3a1P08121 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC21.85■■□□□ 1.09
Col3a1P08121 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col3a1P08121 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Col3a1P08121 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col3a1P08121 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col3a1P08121 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col3a1P08121 Gm7712-202ENSMUST00000222331 1510 ntBASIC21.85■■□□□ 1.09
Col3a1P08121 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col3a1P08121 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC21.85■■□□□ 1.09
Col3a1P08121 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC21.84■■□□□ 1.09
Col3a1P08121 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col3a1P08121 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col3a1P08121 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col3a1P08121 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC21.84■■□□□ 1.09
Col3a1P08121 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Col3a1P08121 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col3a1P08121 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col3a1P08121 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col3a1P08121 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC21.84■■□□□ 1.09
Col3a1P08121 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
Col3a1P08121 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Col3a1P08121 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
Col3a1P08121 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC21.83■■□□□ 1.09
Col3a1P08121 Gm43799-201ENSMUST00000201845 579 ntBASIC21.83■■□□□ 1.09
Col3a1P08121 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC21.83■■□□□ 1.09
Col3a1P08121 Timm23-208ENSMUST00000226683 750 ntBASIC21.83■■□□□ 1.09
Col3a1P08121 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Col3a1P08121 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col3a1P08121 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col3a1P08121 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col3a1P08121 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col3a1P08121 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col3a1P08121 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col3a1P08121 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col3a1P08121 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col3a1P08121 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col3a1P08121 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col3a1P08121 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.08
Col3a1P08121 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Col3a1P08121 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col3a1P08121 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col3a1P08121 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Col3a1P08121 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col3a1P08121 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Col3a1P08121 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col3a1P08121 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col3a1P08121 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col3a1P08121 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC21.81■■□□□ 1.08
Col3a1P08121 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Col3a1P08121 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Col3a1P08121 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Col3a1P08121 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Col3a1P08121 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col3a1P08121 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Col3a1P08121 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Col3a1P08121 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Col3a1P08121 AC153881.2-201ENSMUST00000214877 204 ntBASIC21.81■■□□□ 1.08
Col3a1P08121 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col3a1P08121 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col3a1P08121 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col3a1P08121 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col3a1P08121 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col3a1P08121 Gm8668-201ENSMUST00000120559 1447 ntBASIC21.8■■□□□ 1.08
Col3a1P08121 Gm43213-201ENSMUST00000151866 1790 ntBASIC21.8■■□□□ 1.08
Col3a1P08121 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Col3a1P08121 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col3a1P08121 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Col3a1P08121 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col3a1P08121 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col3a1P08121 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Col3a1P08121 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Col3a1P08121 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col3a1P08121 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col3a1P08121 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC21.79■■□□□ 1.08
Col3a1P08121 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col3a1P08121 AC156016.1-201ENSMUST00000227190 1035 ntBASIC21.78■■□□□ 1.08
Col3a1P08121 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col3a1P08121 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col3a1P08121 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
Col3a1P08121 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col3a1P08121 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Col3a1P08121 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col3a1P08121 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Col3a1P08121 Gm6433-201ENSMUST00000118634 875 ntBASIC21.77■■□□□ 1.08
Col3a1P08121 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Col3a1P08121 Otx2os1-204ENSMUST00000227221 751 ntBASIC21.77■■□□□ 1.08
Col3a1P08121 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col3a1P08121 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col3a1P08121 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col3a1P08121 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Col3a1P08121 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms