Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Gm10653-202ENSMUST00000139570 835 ntBASIC20.34■□□□□ 0.85
Pcdha4O88689 Gm27275-201ENSMUST00000184318 272 ntBASIC20.34■□□□□ 0.85
Pcdha4O88689 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC20.34■□□□□ 0.85
Pcdha4O88689 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdha4O88689 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
Pcdha4O88689 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdha4O88689 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdha4O88689 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.33■□□□□ 0.85
Pcdha4O88689 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Pcdha4O88689 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Pcdha4O88689 Gm11927-201ENSMUST00000118472 759 ntBASIC20.33■□□□□ 0.85
Pcdha4O88689 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Pcdha4O88689 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Pcdha4O88689 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.33■□□□□ 0.85
Pcdha4O88689 Gm38285-201ENSMUST00000192928 922 ntBASIC20.33■□□□□ 0.85
Pcdha4O88689 Trmt13-210ENSMUST00000198454 880 ntBASIC20.33■□□□□ 0.85
Pcdha4O88689 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Pcdha4O88689 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Pcdha4O88689 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Pcdha4O88689 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Pcdha4O88689 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Pcdha4O88689 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Pcdha4O88689 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC20.33■□□□□ 0.84
Pcdha4O88689 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Pcdha4O88689 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Pcdha4O88689 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Pcdha4O88689 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdha4O88689 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Pcdha4O88689 Gm21596-201ENSMUST00000178049 1316 ntBASIC20.32■□□□□ 0.84
Pcdha4O88689 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdha4O88689 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdha4O88689 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdha4O88689 Gm11249-201ENSMUST00000117071 859 ntBASIC20.32■□□□□ 0.84
Pcdha4O88689 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Pcdha4O88689 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdha4O88689 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.32■□□□□ 0.84
Pcdha4O88689 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdha4O88689 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdha4O88689 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdha4O88689 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Pcdha4O88689 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdha4O88689 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pcdha4O88689 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.32■□□□□ 0.84
Pcdha4O88689 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Pcdha4O88689 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
Pcdha4O88689 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Pcdha4O88689 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Gm20760-201ENSMUST00000179197 648 ntBASIC20.31■□□□□ 0.84
Pcdha4O88689 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.31■□□□□ 0.84
Pcdha4O88689 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Pcdha4O88689 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdha4O88689 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdha4O88689 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdha4O88689 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdha4O88689 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdha4O88689 Gm27011-201ENSMUST00000182352 972 ntBASIC20.3■□□□□ 0.84
Pcdha4O88689 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdha4O88689 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdha4O88689 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdha4O88689 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdha4O88689 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pcdha4O88689 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Pcdha4O88689 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Pcdha4O88689 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Pcdha4O88689 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Pcdha4O88689 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Pcdha4O88689 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Pcdha4O88689 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.29■□□□□ 0.84
Pcdha4O88689 Gm44878-201ENSMUST00000205812 1295 ntBASIC20.29■□□□□ 0.84
Pcdha4O88689 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC20.29■□□□□ 0.84
Pcdha4O88689 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Pcdha4O88689 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Pcdha4O88689 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Pcdha4O88689 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Pcdha4O88689 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Pcdha4O88689 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms