Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Odf3b-204ENSMUST00000227834 930 ntBASIC21.98■■□□□ 1.11
Ube4aE9Q735 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ube4aE9Q735 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
Ube4aE9Q735 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ube4aE9Q735 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ube4aE9Q735 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ube4aE9Q735 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ube4aE9Q735 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ube4aE9Q735 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ube4aE9Q735 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ube4aE9Q735 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ube4aE9Q735 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ube4aE9Q735 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Ube4aE9Q735 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ube4aE9Q735 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ube4aE9Q735 Gm6433-201ENSMUST00000118634 875 ntBASIC21.97■■□□□ 1.11
Ube4aE9Q735 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ube4aE9Q735 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC21.97■■□□□ 1.11
Ube4aE9Q735 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ube4aE9Q735 Gm38345-201ENSMUST00000192635 1748 ntBASIC21.97■■□□□ 1.11
Ube4aE9Q735 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ube4aE9Q735 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ube4aE9Q735 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ube4aE9Q735 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ube4aE9Q735 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ube4aE9Q735 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ube4aE9Q735 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ube4aE9Q735 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ube4aE9Q735 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC21.95■■□□□ 1.1
Ube4aE9Q735 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ube4aE9Q735 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ube4aE9Q735 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ube4aE9Q735 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Ube4aE9Q735 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC21.95■■□□□ 1.1
Ube4aE9Q735 Timm23-208ENSMUST00000226683 750 ntBASIC21.95■■□□□ 1.1
Ube4aE9Q735 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Ube4aE9Q735 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ube4aE9Q735 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Ube4aE9Q735 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Ube4aE9Q735 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Ube4aE9Q735 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC21.93■■□□□ 1.1
Ube4aE9Q735 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
Ube4aE9Q735 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Ube4aE9Q735 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Ube4aE9Q735 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Ube4aE9Q735 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Ube4aE9Q735 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Ube4aE9Q735 Gm9885-202ENSMUST00000186234 2209 ntBASIC21.92■■□□□ 1.1
Ube4aE9Q735 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Gm3375-201ENSMUST00000203929 796 ntBASIC21.92■■□□□ 1.1
Ube4aE9Q735 Gm30025-201ENSMUST00000218555 728 ntBASIC21.92■■□□□ 1.1
Ube4aE9Q735 AC121577.1-201ENSMUST00000227302 707 ntBASIC21.92■■□□□ 1.1
Ube4aE9Q735 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Ube4aE9Q735 AC121961.1-201ENSMUST00000218594 1779 ntBASIC21.92■■□□□ 1.1
Ube4aE9Q735 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Ube4aE9Q735 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Ube4aE9Q735 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ube4aE9Q735 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ube4aE9Q735 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ube4aE9Q735 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Ube4aE9Q735 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ube4aE9Q735 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Ube4aE9Q735 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Ube4aE9Q735 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
Ube4aE9Q735 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ube4aE9Q735 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.09
Ube4aE9Q735 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
Ube4aE9Q735 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms