Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Gm12251-201ENSMUST00000117893 792 ntBASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Gm45417-201ENSMUST00000209533 758 ntBASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trbv1A0A0B4J1G7 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trbv1A0A0B4J1G7 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trbv1A0A0B4J1G7 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trbv1A0A0B4J1G7 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trbv1A0A0B4J1G7 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trbv1A0A0B4J1G7 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 AC154266.1-201ENSMUST00000223190 503 ntBASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm38308-201ENSMUST00000194934 1809 ntBASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trbv1A0A0B4J1G7 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm32699-201ENSMUST00000221728 1988 ntBASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm15743-202ENSMUST00000182690 1901 ntBASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trbv1A0A0B4J1G7 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm7292-201ENSMUST00000194706 2527 ntBASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Flvcr1-202ENSMUST00000191946 1216 ntBASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC14.25□□□□□ -0.13
Trbv1A0A0B4J1G7 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm43173-201ENSMUST00000202246 593 ntBASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 AC137127.1-201ENSMUST00000213466 1078 ntBASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Gm6139-201ENSMUST00000079261 882 ntBASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trbv1A0A0B4J1G7 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms