Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Hist1h1d-201ENSMUST00000045301 7425 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Cux1P53564 Slmap-202ENSMUST00000090359 4076 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Cux1P53564 AC151904.1-201ENSMUST00000219945 1498 ntBASIC10.08□□□□□ -0.8
Cux1P53564 Gfpt1-204ENSMUST00000113658 6238 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cux1P53564 Gm9519-201ENSMUST00000206108 1337 ntBASIC10.08□□□□□ -0.8
Cux1P53564 Grik1-209ENSMUST00000227986 2942 ntBASIC10.08□□□□□ -0.8
Cux1P53564 Tnik-202ENSMUST00000159308 3831 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Cux1P53564 Tom1l1-202ENSMUST00000107867 2439 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cux1P53564 Glb1l2-201ENSMUST00000040398 3701 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cux1P53564 Slamf7-202ENSMUST00000192024 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cux1P53564 AC123629.1-201ENSMUST00000225669 1364 ntBASIC10.08□□□□□ -0.8
Cux1P53564 Cfap44-201ENSMUST00000099742 6583 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cux1P53564 Cd163-202ENSMUST00000112541 4443 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cux1P53564 Rdh1-201ENSMUST00000073639 3930 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cux1P53564 Sis-201ENSMUST00000094190 5887 ntAPPRIS P1 TSL 2 BASIC10.08□□□□□ -0.8
Cux1P53564 Tm4sf1-205ENSMUST00000196979 3372 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cux1P53564 Nin-202ENSMUST00000085314 9675 ntAPPRIS P4 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cux1P53564 Ifi207-201ENSMUST00000042610 3422 ntAPPRIS P2 TSL 5 BASIC10.07□□□□□ -0.8
Cux1P53564 C8a-202ENSMUST00000064873 3617 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cux1P53564 Gm23910-201ENSMUST00000104597 132 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm14550-201ENSMUST00000117918 407 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm12099-201ENSMUST00000118660 750 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm24065-201ENSMUST00000157487 264 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm17198-201ENSMUST00000171792 1154 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm8895-201ENSMUST00000172300 1223 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm27227-201ENSMUST00000183413 633 ntTSL 3 BASIC10.07□□□□□ -0.8
Cux1P53564 Gm34225-201ENSMUST00000205469 443 ntTSL 5 BASIC10.07□□□□□ -0.8
Cux1P53564 Gm18781-201ENSMUST00000211252 924 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm45514-201ENSMUST00000211531 689 ntBASIC10.07□□□□□ -0.8
Cux1P53564 AC121788.1-201ENSMUST00000218514 1046 ntTSL 5 BASIC10.07□□□□□ -0.8
Cux1P53564 AC211878.6-201ENSMUST00000221896 358 ntBASIC10.07□□□□□ -0.8
Cux1P53564 AC154633.1-201ENSMUST00000223276 449 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Tep1-201ENSMUST00000006444 8171 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cux1P53564 Oat-rs1-201ENSMUST00000122186 1311 ntBASIC10.07□□□□□ -0.8
Cux1P53564 B3gnt5-207ENSMUST00000164397 4872 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Cux1P53564 Gm17354-201ENSMUST00000170933 3039 ntTSL 5 BASIC10.07□□□□□ -0.8
Cux1P53564 Gm37457-201ENSMUST00000193639 2433 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Sema6a-206ENSMUST00000135790 4339 ntTSL 5 BASIC10.07□□□□□ -0.8
Cux1P53564 Nsrp1-201ENSMUST00000102494 3114 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cux1P53564 Fto-204ENSMUST00000136802 3751 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cux1P53564 Il1f9-201ENSMUST00000057567 1648 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cux1P53564 Arnt-205ENSMUST00000107161 4260 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cux1P53564 Zfp831-201ENSMUST00000059452 9807 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Cux1P53564 Adgrl3-205ENSMUST00000117985 4974 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Cux1P53564 Adgrl3-212ENSMUST00000120144 4999 ntTSL 5 BASIC10.07□□□□□ -0.8
Cux1P53564 Gm1965-202ENSMUST00000161362 2405 ntTSL 2 BASIC10.07□□□□□ -0.8
Cux1P53564 Gm26067-201ENSMUST00000103789 110 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm7146-201ENSMUST00000116079 739 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm23539-201ENSMUST00000157537 224 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm23031-201ENSMUST00000157998 119 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm16269-201ENSMUST00000160532 409 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm5692-201ENSMUST00000187254 1057 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Gm8667-201ENSMUST00000211112 449 ntBASIC10.07□□□□□ -0.8
Cux1P53564 AC154595.2-201ENSMUST00000225067 310 ntBASIC10.07□□□□□ -0.8
Cux1P53564 Ppp1r1c-201ENSMUST00000040863 629 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cux1P53564 Gm5142-201ENSMUST00000066558 626 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cux1P53564 Olfr836-201ENSMUST00000074986 955 ntAPPRIS P2 BASIC10.07□□□□□ -0.8
Cux1P53564 Frs2-201ENSMUST00000020381 6420 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cux1P53564 Olfr1500-207ENSMUST00000219674 2287 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Cux1P53564 CT571245.1-201ENSMUST00000218642 3465 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Erc1-210ENSMUST00000184864 5428 ntAPPRIS ALT1 TSL 5 BASIC10.06□□□□□ -0.8
Cux1P53564 Naip2-202ENSMUST00000117913 4823 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Tbpl2-201ENSMUST00000080453 1379 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Xpo1-203ENSMUST00000102870 3471 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Cux1P53564 CT010514.1-201ENSMUST00000214088 2969 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Pnpla8-202ENSMUST00000122902 2728 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Gm43864-201ENSMUST00000204452 4028 ntBASIC10.06□□□□□ -0.8
Cux1P53564 A930038B10Rik-201ENSMUST00000180412 4084 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Myo1e-201ENSMUST00000034745 4625 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Olfr303-203ENSMUST00000215532 3572 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Cux1P53564 Pfkfb3-206ENSMUST00000114846 4634 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Slc7a14-201ENSMUST00000091259 8897 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Gm44661-201ENSMUST00000208830 3503 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Gm15366-201ENSMUST00000118433 1019 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Gm12400-201ENSMUST00000120915 1003 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Gm11848-201ENSMUST00000121207 973 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Olfr408-ps1-201ENSMUST00000121710 941 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Obox4-ps23-201ENSMUST00000175738 1137 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Obox4-ps33-201ENSMUST00000176649 1139 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Obox4-ps22-201ENSMUST00000179602 1137 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Obox4-ps13-201ENSMUST00000180123 1137 ntBASIC10.06□□□□□ -0.8
Cux1P53564 AC105950.1-201ENSMUST00000222637 408 ntBASIC10.06□□□□□ -0.8
Cux1P53564 Smim15-203ENSMUST00000224361 830 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
Cux1P53564 Tsc1-203ENSMUST00000113869 7702 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Sh2d4b-201ENSMUST00000070328 3086 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Sorbs2-201ENSMUST00000067065 6337 ntTSL 5 BASIC10.06□□□□□ -0.8
Cux1P53564 Pou1f1-204ENSMUST00000176330 1310 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Atp13a4-202ENSMUST00000057018 4054 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Kirrel3os-201ENSMUST00000066604 3799 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Cux1P53564 Otub2-205ENSMUST00000179684 2890 ntTSL 5 BASIC10.06□□□□□ -0.8
Cux1P53564 Gpatch11-201ENSMUST00000170759 4198 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Cux1P53564 Phf6-202ENSMUST00000101587 3639 ntTSL 2 BASIC10.05□□□□□ -0.8
Cux1P53564 Alkbh8-201ENSMUST00000053407 3603 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Cux1P53564 Wnk1-218ENSMUST00000161512 1426 ntBASIC10.05□□□□□ -0.8
Cux1P53564 Zfp455-202ENSMUST00000120861 2712 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
Cux1P53564 Cep85-202ENSMUST00000121566 3748 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Cux1P53564 1810011H11Rik-201ENSMUST00000039191 1489 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Cux1P53564 Olfr1320-203ENSMUST00000214375 1831 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Cux1P53564 Ncbp3-201ENSMUST00000021135 12106 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Cux1P53564 Setd5-203ENSMUST00000113157 6527 ntTSL 5 BASIC10.05□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms