Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 AC165260.6-206ENSMUST00000223884 3698 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Cenpw-202ENSMUST00000216853 4143 ntAPPRIS ALT1 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Obox2-201ENSMUST00000036575 1459 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Ctsm-201ENSMUST00000099451 1457 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Gm43410-201ENSMUST00000197510 2234 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Utrn-201ENSMUST00000076817 12382 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Ezh1-203ENSMUST00000107285 4193 ntAPPRIS P2 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Tsix-201ENSMUST00000152916 4306 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Tcrg-V6-201ENSMUST00000103555 403 ntAPPRIS ALT2 BASIC7.82□□□□□ -1.16
Traf1P39428 Gm22284-201ENSMUST00000104132 132 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm14864-201ENSMUST00000116164 1087 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm15048-201ENSMUST00000118201 954 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm14614-201ENSMUST00000119873 384 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm8648-201ENSMUST00000122457 221 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm16248-201ENSMUST00000124238 243 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Mipol1-203ENSMUST00000130447 2171 ntAPPRIS ALT2 TSL 5 BASIC7.82□□□□□ -1.16
Traf1P39428 Gm12160-201ENSMUST00000146372 342 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Gm13839-201ENSMUST00000151639 506 ntTSL 2 BASIC7.82□□□□□ -1.16
Traf1P39428 Cfap61-212ENSMUST00000152515 640 ntTSL 3 BASIC7.82□□□□□ -1.16
Traf1P39428 Mipol1-208ENSMUST00000153137 2158 ntAPPRIS ALT2 TSL 5 BASIC7.82□□□□□ -1.16
Traf1P39428 Gm22223-201ENSMUST00000157360 125 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm22552-201ENSMUST00000157796 337 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm25717-201ENSMUST00000158631 353 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Crnde-205ENSMUST00000179400 651 ntTSL 2 BASIC7.82□□□□□ -1.16
Traf1P39428 Gm27295-201ENSMUST00000184264 153 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm27601-201ENSMUST00000184794 127 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm28620-201ENSMUST00000190463 439 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm37065-201ENSMUST00000191636 444 ntTSL 2 BASIC7.82□□□□□ -1.16
Traf1P39428 Ccl2-201ENSMUST00000000193 813 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Gm37068-201ENSMUST00000195168 640 ntTSL 3 BASIC7.82□□□□□ -1.16
Traf1P39428 Smarca2-231ENSMUST00000208091 1140 ntTSL 5 BASIC7.82□□□□□ -1.16
Traf1P39428 Gm19116-201ENSMUST00000218592 642 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm40645-202ENSMUST00000219828 874 ntTSL 5 BASIC7.82□□□□□ -1.16
Traf1P39428 Sfrp4-204ENSMUST00000222992 1062 ntTSL 5 BASIC7.82□□□□□ -1.16
Traf1P39428 AC105324.1-201ENSMUST00000227844 386 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Sbpl-201ENSMUST00000024939 870 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Prl3d1-201ENSMUST00000082079 872 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Olfr1224-ps1-202ENSMUST00000099793 1212 ntAPPRIS P1 TSL 3 BASIC7.82□□□□□ -1.16
Traf1P39428 Vmn2r118-201ENSMUST00000168440 2562 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
Traf1P39428 Birc6-204ENSMUST00000182133 14604 ntAPPRIS ALT2 TSL 5 BASIC7.82□□□□□ -1.16
Traf1P39428 Birc6-215ENSMUST00000182597 14649 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Birc6-220ENSMUST00000182944 14610 ntAPPRIS ALT2 TSL 5 BASIC7.82□□□□□ -1.16
Traf1P39428 AC139941.2-201ENSMUST00000221565 1824 ntBASIC7.82□□□□□ -1.16
Traf1P39428 Gm33148-201ENSMUST00000210835 7227 ntTSL 5 BASIC7.82□□□□□ -1.16
Traf1P39428 Itch-201ENSMUST00000029126 5159 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Olfr1366-203ENSMUST00000205976 3112 ntAPPRIS ALT2 TSL 5 BASIC7.82□□□□□ -1.16
Traf1P39428 Il15ra-213ENSMUST00000135341 1545 ntTSL 3 BASIC7.82□□□□□ -1.16
Traf1P39428 Zwint-202ENSMUST00000105431 2676 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Vmn1r218-202ENSMUST00000226692 10430 ntAPPRIS P2 BASIC7.82□□□□□ -1.16
Traf1P39428 Esf1-201ENSMUST00000046030 3396 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Ogdh-203ENSMUST00000093350 4075 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Vmn1r90-204ENSMUST00000226802 7185 ntAPPRIS P2 BASIC7.82□□□□□ -1.16
Traf1P39428 Mdm4-202ENSMUST00000067429 3490 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
Traf1P39428 Zfp459-201ENSMUST00000056470 3334 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 Vmn1r181-204ENSMUST00000227637 4587 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
Traf1P39428 Cfap221-202ENSMUST00000174370 2871 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
Traf1P39428 Dcdc5-202ENSMUST00000122388 4957 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Cd200r4-202ENSMUST00000176321 2005 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 C330024D21Rik-202ENSMUST00000202634 2020 ntTSL 2 BASIC7.81□□□□□ -1.16
Traf1P39428 Tlr11-201ENSMUST00000063570 2993 ntAPPRIS ALT2 BASIC7.81□□□□□ -1.16
Traf1P39428 Mtpap-201ENSMUST00000025077 2651 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 Gm14548-201ENSMUST00000070639 2128 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
Traf1P39428 Alg6-201ENSMUST00000097961 3079 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 Mapk10-201ENSMUST00000086854 6630 ntAPPRIS ALT1 TSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 B020004C17Rik-201ENSMUST00000178161 2385 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 Gm12842-201ENSMUST00000117298 476 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Olfr1063-ps1-201ENSMUST00000118807 942 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm15217-202ENSMUST00000141358 347 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
Traf1P39428 Gm11335-201ENSMUST00000148743 1080 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 Gm23276-201ENSMUST00000157913 138 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm3140-201ENSMUST00000163523 481 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm4152-201ENSMUST00000172675 259 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm6726-201ENSMUST00000172786 681 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm20615-201ENSMUST00000177503 705 ntBASIC7.81□□□□□ -1.16
Traf1P39428 D13Ertd608e-201ENSMUST00000179131 417 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
Traf1P39428 1700054K02Rik-201ENSMUST00000181755 376 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm27152-201ENSMUST00000183828 99 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm29337-201ENSMUST00000185425 284 ntTSL 3 BASIC7.81□□□□□ -1.16
Traf1P39428 Gm29206-201ENSMUST00000189321 827 ntTSL 5 BASIC7.81□□□□□ -1.16
Traf1P39428 AL929555.1-201ENSMUST00000215283 509 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm4556-201ENSMUST00000217808 355 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm18112-201ENSMUST00000219862 1195 ntBASIC7.81□□□□□ -1.16
Traf1P39428 BC028528-202ENSMUST00000090476 809 ntAPPRIS P3 TSL 2 BASIC7.81□□□□□ -1.16
Traf1P39428 Gm7731-201ENSMUST00000091759 470 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm8444-201ENSMUST00000092020 357 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
Traf1P39428 Tmprss15-202ENSMUST00000060402 3681 ntAPPRIS ALT2 TSL 2 BASIC7.81□□□□□ -1.16
Traf1P39428 Gm10773-201ENSMUST00000218071 3935 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Gm43088-201ENSMUST00000197530 2347 ntBASIC7.81□□□□□ -1.16
Traf1P39428 4930579H20Rik-201ENSMUST00000187815 1516 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 Uba1y-201ENSMUST00000115894 3981 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
Traf1P39428 Zfp280d-203ENSMUST00000183410 4200 ntAPPRIS ALT2 TSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 AC161247.1-201ENSMUST00000217744 2295 ntBASIC7.81□□□□□ -1.16
Traf1P39428 Tbc1d24-213ENSMUST00000201805 3806 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 Scn3a-202ENSMUST00000100069 8550 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
Traf1P39428 Gm11590-201ENSMUST00000118999 1455 ntBASIC7.81□□□□□ -1.16
Traf1P39428 A2ml1-201ENSMUST00000060574 4695 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
Traf1P39428 Gm38026-201ENSMUST00000193284 3880 ntBASIC7.8□□□□□ -1.16
Traf1P39428 AC159002.2-201ENSMUST00000228843 4874 ntBASIC7.8□□□□□ -1.16
Traf1P39428 Kif15-201ENSMUST00000040717 4858 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
Traf1P39428 AC160966.1-202ENSMUST00000216860 1318 ntTSL 5 BASIC7.8□□□□□ -1.16
Retrieved 100 of 76,532 protein–RNA pairs in 81.6 ms