Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Vmn2r111-201ENSMUST00000092491 2574 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Usp17lb-201ENSMUST00000076501 1407 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Foxp2-209ENSMUST00000131414 1381 ntTSL 5 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Olfr1312-204ENSMUST00000215531 2975 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm26816-201ENSMUST00000180679 2448 ntTSL 5 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Olfr417-203ENSMUST00000220394 6080 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Trav8d-1-201ENSMUST00000103580 400 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm26416-201ENSMUST00000104280 134 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Prkd3-203ENSMUST00000118991 1265 ntTSL 2 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm12321-201ENSMUST00000121485 804 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Pabpn1-203ENSMUST00000139985 903 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Stau2-209ENSMUST00000145092 564 ntTSL 5 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm23220-201ENSMUST00000158115 137 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm25717-201ENSMUST00000158631 353 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Dctd-205ENSMUST00000174278 799 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm8245-201ENSMUST00000182434 987 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Ighv5-21-201ENSMUST00000191935 295 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Fxyd7-202ENSMUST00000206341 620 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm44984-201ENSMUST00000207802 394 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm45454-201ENSMUST00000211484 455 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 AC127224.1-201ENSMUST00000218094 453 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Olfr809-203ENSMUST00000218237 1100 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 AC166258.1-201ENSMUST00000219823 893 ntTSL 3 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Uqcrb-201ENSMUST00000021993 535 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm46424-201ENSMUST00000221567 168 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Cinp-209ENSMUST00000222457 723 ntTSL 2 BASIC5.33□□□□□ -1.56
Hmgb3O54879 AC163684.1-201ENSMUST00000223766 927 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Tpbpb-203ENSMUST00000223978 991 ntAPPRIS ALT2 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Zfp874a-208ENSMUST00000225479 1092 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 CT025667.1-201ENSMUST00000225872 382 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 AC164436.1-201ENSMUST00000227074 772 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Olfr809-201ENSMUST00000059891 1100 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Olfr1262-201ENSMUST00000061701 1024 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm5321-201ENSMUST00000072050 447 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Olfr1287-201ENSMUST00000075390 918 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm10540-201ENSMUST00000097581 276 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Olfr1039-201ENSMUST00000099910 960 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm37429-201ENSMUST00000193807 1799 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Ifi204-201ENSMUST00000111214 2296 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Olfr1382-205ENSMUST00000217564 4287 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Sema6d-205ENSMUST00000103238 3165 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Foxp2-204ENSMUST00000115472 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm42531-201ENSMUST00000201648 4048 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Trmt10a-201ENSMUST00000040321 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Obox3-202ENSMUST00000095217 1603 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Gm44433-201ENSMUST00000203540 4832 ntBASIC5.33□□□□□ -1.56
Hmgb3O54879 Hmmr-201ENSMUST00000020579 3892 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Tdrkh-205ENSMUST00000197495 2476 ntTSL 5 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Vmn1r43-204ENSMUST00000226983 12805 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Rnf145-202ENSMUST00000101327 4214 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Ctage5-202ENSMUST00000069430 2869 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Hmgb3O54879 Olfr1115-202ENSMUST00000213513 3604 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
Hmgb3O54879 Ubtfl1-203ENSMUST00000169398 4430 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Vmn1r35-204ENSMUST00000227749 2254 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
Hmgb3O54879 Tmprss11a-201ENSMUST00000101073 2657 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm42756-201ENSMUST00000196601 2614 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Catsperg2-209ENSMUST00000209126 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 1110059G10Rik-201ENSMUST00000035154 3361 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Ppig-202ENSMUST00000090858 6127 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Tnfaip6-201ENSMUST00000065927 1710 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Spata22-201ENSMUST00000117445 3200 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
Hmgb3O54879 5033425B01Rik-201ENSMUST00000213948 1303 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 AC107452.3-201ENSMUST00000228807 1308 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Mbd3l2-201ENSMUST00000051008 2075 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Fchsd2-202ENSMUST00000098250 4316 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Mapk10-204ENSMUST00000112848 6761 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm6743-201ENSMUST00000117345 1066 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm14513-201ENSMUST00000117403 123 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 1700054M17Rik-201ENSMUST00000125654 445 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Crisp2-203ENSMUST00000131699 538 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm13715-201ENSMUST00000136578 411 ntTSL 3 BASIC5.32□□□□□ -1.56
Hmgb3O54879 Plxna4os3-202ENSMUST00000143328 277 ntTSL 3 BASIC5.32□□□□□ -1.56
Hmgb3O54879 Xbp1-204ENSMUST00000149623 897 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
Hmgb3O54879 Gad1os-201ENSMUST00000151851 889 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm15787-207ENSMUST00000152014 885 ntTSL 2 BASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm13017-201ENSMUST00000156409 400 ntTSL 3 BASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm25455-201ENSMUST00000157946 325 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm8893-201ENSMUST00000172146 1242 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm20429-202ENSMUST00000174168 820 ntTSL 3 BASIC5.32□□□□□ -1.56
Hmgb3O54879 Obox4-ps36-201ENSMUST00000177206 723 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Obox4-ps16-201ENSMUST00000177624 1137 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Obox4-ps17-201ENSMUST00000178341 1137 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm2888-202ENSMUST00000178577 618 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
Hmgb3O54879 Obox4-ps18-201ENSMUST00000179441 1137 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm27001-201ENSMUST00000182252 936 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Mir7084-201ENSMUST00000183876 70 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Pkia-203ENSMUST00000193330 631 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm44258-201ENSMUST00000204925 301 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Hba-x-201ENSMUST00000020531 801 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Rps12-ps4-201ENSMUST00000208689 397 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 4933432G23Rik-201ENSMUST00000213675 840 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Hmgb3O54879 Olfr1251-203ENSMUST00000214750 1040 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm18655-201ENSMUST00000214802 1090 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm29154-253ENSMUST00000217229 1207 ntTSL 5 BASIC5.32□□□□□ -1.56
Hmgb3O54879 AC105167.1-201ENSMUST00000219966 253 ntTSL 5 BASIC5.32□□□□□ -1.56
Hmgb3O54879 AC102689.1-201ENSMUST00000220511 1090 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 Gm10126-201ENSMUST00000221732 168 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 AC165154.2-201ENSMUST00000227310 336 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 AC121542.2-201ENSMUST00000227529 400 ntBASIC5.32□□□□□ -1.56
Hmgb3O54879 AC136376.1-201ENSMUST00000228496 950 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 76,532 protein–RNA pairs in 89.5 ms