Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col13a1Q9R1N9 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Gm8668-201ENSMUST00000120559 1447 ntBASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 AC163280.1-201ENSMUST00000228194 1100 ntBASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col13a1Q9R1N9 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Gm6659-201ENSMUST00000174752 547 ntBASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col13a1Q9R1N9 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col13a1Q9R1N9 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC15.46■□□□□ 0.06
Col13a1Q9R1N9 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col13a1Q9R1N9 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col13a1Q9R1N9 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col13a1Q9R1N9 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col13a1Q9R1N9 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col13a1Q9R1N9 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC15.45■□□□□ 0.06
Col13a1Q9R1N9 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC15.45■□□□□ 0.06
Col13a1Q9R1N9 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col13a1Q9R1N9 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Gm30025-201ENSMUST00000218555 728 ntBASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col13a1Q9R1N9 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Gm10517-202ENSMUST00000192970 758 ntBASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC15.43■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms