Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Lima1Q9ERG0 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Gm21168-201ENSMUST00000199646 1096 ntBASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.01■□□□□ 0.47
Lima1Q9ERG0 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Lima1Q9ERG0 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Lima1Q9ERG0 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC18■□□□□ 0.47
Lima1Q9ERG0 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC18■□□□□ 0.47
Lima1Q9ERG0 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Lima1Q9ERG0 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
Lima1Q9ERG0 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Lima1Q9ERG0 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
Lima1Q9ERG0 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Lima1Q9ERG0 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Gm43060-201ENSMUST00000200621 289 ntBASIC17.99■□□□□ 0.47
Lima1Q9ERG0 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Lima1Q9ERG0 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Lima1Q9ERG0 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Gm5898-201ENSMUST00000121016 2071 ntBASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Lima1Q9ERG0 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms