Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Upf1Q9EPU0 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf1Q9EPU0 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
Upf1Q9EPU0 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf1Q9EPU0 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
Upf1Q9EPU0 AC159093.1-201ENSMUST00000227779 380 ntBASIC20.89■□□□□ 0.93
Upf1Q9EPU0 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf1Q9EPU0 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf1Q9EPU0 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.89■□□□□ 0.93
Upf1Q9EPU0 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Upf1Q9EPU0 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Upf1Q9EPU0 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf1Q9EPU0 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf1Q9EPU0 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf1Q9EPU0 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf1Q9EPU0 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC20.88■□□□□ 0.93
Upf1Q9EPU0 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC20.88■□□□□ 0.93
Upf1Q9EPU0 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Upf1Q9EPU0 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf1Q9EPU0 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Upf1Q9EPU0 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf1Q9EPU0 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.87■□□□□ 0.93
Upf1Q9EPU0 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf1Q9EPU0 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf1Q9EPU0 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf1Q9EPU0 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Upf1Q9EPU0 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC20.87■□□□□ 0.93
Upf1Q9EPU0 Gm7213-201ENSMUST00000215977 950 ntBASIC20.87■□□□□ 0.93
Upf1Q9EPU0 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Upf1Q9EPU0 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Upf1Q9EPU0 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Olfr129-201ENSMUST00000122318 993 ntBASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Gm9449-201ENSMUST00000207265 1011 ntBASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Gm8784-201ENSMUST00000222096 1435 ntBASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf1Q9EPU0 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Gm8000-201ENSMUST00000188378 592 ntBASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Gm45328-201ENSMUST00000210942 917 ntBASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Upf1Q9EPU0 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf1Q9EPU0 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Upf1Q9EPU0 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf1Q9EPU0 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC20.83■□□□□ 0.93
Upf1Q9EPU0 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf1Q9EPU0 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf1Q9EPU0 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Upf1Q9EPU0 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Upf1Q9EPU0 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf1Q9EPU0 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf1Q9EPU0 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf1Q9EPU0 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Upf1Q9EPU0 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Upf1Q9EPU0 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf1Q9EPU0 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf1Q9EPU0 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC20.82■□□□□ 0.92
Upf1Q9EPU0 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC20.82■□□□□ 0.92
Upf1Q9EPU0 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms