Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
Smc1aQ9CU62 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smc1aQ9CU62 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smc1aQ9CU62 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.35■□□□□ 0.85
Smc1aQ9CU62 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Smc1aQ9CU62 AA386476-201ENSMUST00000098781 1665 ntBASIC20.35■□□□□ 0.85
Smc1aQ9CU62 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smc1aQ9CU62 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.35■□□□□ 0.85
Smc1aQ9CU62 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smc1aQ9CU62 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Smc1aQ9CU62 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Gm6420-201ENSMUST00000193885 723 ntBASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smc1aQ9CU62 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 Gm12527-201ENSMUST00000117967 564 ntBASIC20.33■□□□□ 0.85
Smc1aQ9CU62 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Smc1aQ9CU62 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Smc1aQ9CU62 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Smc1aQ9CU62 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
Smc1aQ9CU62 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Smc1aQ9CU62 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC20.33■□□□□ 0.84
Smc1aQ9CU62 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Smc1aQ9CU62 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Gm8520-201ENSMUST00000186517 868 ntBASIC20.32■□□□□ 0.84
Smc1aQ9CU62 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Gm37811-201ENSMUST00000192416 2601 ntBASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Smc1aQ9CU62 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Smc1aQ9CU62 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smc1aQ9CU62 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.31■□□□□ 0.84
Smc1aQ9CU62 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smc1aQ9CU62 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Gm13534-201ENSMUST00000121169 513 ntBASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms