Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.27■□□□□ 0.36
Use1Q9CQ56 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.27■□□□□ 0.36
Use1Q9CQ56 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.27■□□□□ 0.36
Use1Q9CQ56 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Use1Q9CQ56 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Use1Q9CQ56 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Use1Q9CQ56 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Use1Q9CQ56 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Use1Q9CQ56 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Use1Q9CQ56 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Use1Q9CQ56 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.27■□□□□ 0.35
Use1Q9CQ56 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Use1Q9CQ56 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Use1Q9CQ56 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Use1Q9CQ56 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Use1Q9CQ56 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Use1Q9CQ56 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms