Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Brf1Q8CFK2 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
Brf1Q8CFK2 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Brf1Q8CFK2 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC22.03■■□□□ 1.12
Brf1Q8CFK2 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Brf1Q8CFK2 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Brf1Q8CFK2 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Brf1Q8CFK2 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Brf1Q8CFK2 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Brf1Q8CFK2 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Gm5953-201ENSMUST00000220644 2616 ntBASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Gm35558-201ENSMUST00000222675 2219 ntBASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Rab3c-203ENSMUST00000224180 967 ntBASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Brf1Q8CFK2 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.11
Brf1Q8CFK2 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Brf1Q8CFK2 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Dapk1-207ENSMUST00000226059 5009 ntBASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Gm29257-201ENSMUST00000186115 639 ntBASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC22.01■■□□□ 1.11
Brf1Q8CFK2 AC140264.2-202ENSMUST00000218746 817 ntBASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
Brf1Q8CFK2 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Brf1Q8CFK2 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC22■■□□□ 1.11
Brf1Q8CFK2 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC22■■□□□ 1.11
Brf1Q8CFK2 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Brf1Q8CFK2 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Brf1Q8CFK2 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC22■■□□□ 1.11
Brf1Q8CFK2 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Brf1Q8CFK2 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC22■■□□□ 1.11
Brf1Q8CFK2 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC22■■□□□ 1.11
Brf1Q8CFK2 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC22■■□□□ 1.11
Brf1Q8CFK2 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC22■■□□□ 1.11
Brf1Q8CFK2 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC22■■□□□ 1.11
Brf1Q8CFK2 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC22■■□□□ 1.11
Brf1Q8CFK2 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC22■■□□□ 1.11
Brf1Q8CFK2 AC123834.2-201ENSMUST00000224038 2340 ntBASIC22■■□□□ 1.11
Brf1Q8CFK2 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Gm3807-201ENSMUST00000193520 1168 ntBASIC21.99■■□□□ 1.11
Brf1Q8CFK2 AC122769.4-201ENSMUST00000228166 901 ntBASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Brf1Q8CFK2 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Fst-202ENSMUST00000223640 2612 ntBASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Gm44672-201ENSMUST00000206944 1098 ntBASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Brf1Q8CFK2 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Brf1Q8CFK2 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Brf1Q8CFK2 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Brf1Q8CFK2 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC21.97■■□□□ 1.11
Brf1Q8CFK2 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC21.97■■□□□ 1.11
Brf1Q8CFK2 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Brf1Q8CFK2 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
Brf1Q8CFK2 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Brf1Q8CFK2 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC21.97■■□□□ 1.11
Brf1Q8CFK2 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC21.97■■□□□ 1.11
Brf1Q8CFK2 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Brf1Q8CFK2 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Brf1Q8CFK2 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Brf1Q8CFK2 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Brf1Q8CFK2 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms