Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Gm5112-201ENSMUST00000204407 2368 ntBASIC18■□□□□ 0.47
Ubp1Q811S7 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ubp1Q811S7 Gm5408-201ENSMUST00000197998 747 ntBASIC18■□□□□ 0.47
Ubp1Q811S7 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
Ubp1Q811S7 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Ubp1Q811S7 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Ubp1Q811S7 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Ubp1Q811S7 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
Ubp1Q811S7 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ubp1Q811S7 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18■□□□□ 0.47
Ubp1Q811S7 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubp1Q811S7 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ubp1Q811S7 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ubp1Q811S7 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubp1Q811S7 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubp1Q811S7 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.98■□□□□ 0.47
Ubp1Q811S7 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.98■□□□□ 0.47
Ubp1Q811S7 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.98■□□□□ 0.47
Ubp1Q811S7 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubp1Q811S7 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubp1Q811S7 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ubp1Q811S7 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ubp1Q811S7 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ubp1Q811S7 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ubp1Q811S7 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.97■□□□□ 0.47
Ubp1Q811S7 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ubp1Q811S7 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC17.97■□□□□ 0.47
Ubp1Q811S7 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ubp1Q811S7 Gm42922-201ENSMUST00000195887 2078 ntBASIC17.97■□□□□ 0.47
Ubp1Q811S7 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ubp1Q811S7 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Ubp1Q811S7 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ubp1Q811S7 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Ubp1Q811S7 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ubp1Q811S7 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.96■□□□□ 0.47
Ubp1Q811S7 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ubp1Q811S7 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Ubp1Q811S7 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Ubp1Q811S7 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ubp1Q811S7 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ubp1Q811S7 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ubp1Q811S7 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC17.95■□□□□ 0.46
Ubp1Q811S7 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC17.95■□□□□ 0.46
Ubp1Q811S7 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ubp1Q811S7 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ubp1Q811S7 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ubp1Q811S7 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ubp1Q811S7 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Ubp1Q811S7 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ubp1Q811S7 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ubp1Q811S7 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms