Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Trim56Q80VI1 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Trmt13-210ENSMUST00000198454 880 ntBASIC21.61■■□□□ 1.05
Trim56Q80VI1 AC135637.1-201ENSMUST00000227750 365 ntBASIC21.61■■□□□ 1.05
Trim56Q80VI1 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Trim56Q80VI1 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC21.61■■□□□ 1.05
Trim56Q80VI1 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.6■■□□□ 1.05
Trim56Q80VI1 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trim56Q80VI1 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Trim56Q80VI1 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim56Q80VI1 Gm15847-201ENSMUST00000121417 1065 ntBASIC21.59■■□□□ 1.05
Trim56Q80VI1 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim56Q80VI1 Gm44878-201ENSMUST00000205812 1295 ntBASIC21.59■■□□□ 1.05
Trim56Q80VI1 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC21.59■■□□□ 1.05
Trim56Q80VI1 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim56Q80VI1 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim56Q80VI1 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim56Q80VI1 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim56Q80VI1 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim56Q80VI1 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim56Q80VI1 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim56Q80VI1 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
Trim56Q80VI1 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim56Q80VI1 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim56Q80VI1 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim56Q80VI1 Gm11927-201ENSMUST00000118472 759 ntBASIC21.58■■□□□ 1.05
Trim56Q80VI1 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim56Q80VI1 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim56Q80VI1 Gm5112-201ENSMUST00000204407 2368 ntBASIC21.58■■□□□ 1.04
Trim56Q80VI1 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim56Q80VI1 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Trim56Q80VI1 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim56Q80VI1 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.57■■□□□ 1.04
Trim56Q80VI1 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim56Q80VI1 Gm38345-201ENSMUST00000192635 1748 ntBASIC21.57■■□□□ 1.04
Trim56Q80VI1 Gm44544-201ENSMUST00000207052 1844 ntBASIC21.57■■□□□ 1.04
Trim56Q80VI1 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim56Q80VI1 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim56Q80VI1 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
Trim56Q80VI1 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Trim56Q80VI1 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim56Q80VI1 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Trim56Q80VI1 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim56Q80VI1 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim56Q80VI1 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim56Q80VI1 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim56Q80VI1 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim56Q80VI1 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Zfp783-201ENSMUST00000095946 670 ntBASIC21.55■■□□□ 1.04
Trim56Q80VI1 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Trim56Q80VI1 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Flg-201ENSMUST00000050758 1488 ntBASIC21.54■■□□□ 1.04
Trim56Q80VI1 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Gm20760-201ENSMUST00000179197 648 ntBASIC21.54■■□□□ 1.04
Trim56Q80VI1 Mtag2-201ENSMUST00000058665 714 ntBASIC21.54■■□□□ 1.04
Trim56Q80VI1 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim56Q80VI1 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Trim56Q80VI1 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim56Q80VI1 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim56Q80VI1 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
Trim56Q80VI1 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim56Q80VI1 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim56Q80VI1 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim56Q80VI1 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Trim56Q80VI1 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim56Q80VI1 Fst-202ENSMUST00000223640 2612 ntBASIC21.53■■□□□ 1.04
Trim56Q80VI1 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Trim56Q80VI1 Gm21596-201ENSMUST00000178049 1316 ntBASIC21.53■■□□□ 1.04
Trim56Q80VI1 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim56Q80VI1 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim56Q80VI1 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim56Q80VI1 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms