Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Smarca1Q6PGB8 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.33■□□□□ 0.85
Smarca1Q6PGB8 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.33■□□□□ 0.85
Smarca1Q6PGB8 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Smarca1Q6PGB8 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.33■□□□□ 0.85
Smarca1Q6PGB8 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.33■□□□□ 0.85
Smarca1Q6PGB8 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
Smarca1Q6PGB8 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Smarca1Q6PGB8 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Smarca1Q6PGB8 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Smarca1Q6PGB8 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.33■□□□□ 0.84
Smarca1Q6PGB8 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Smarca1Q6PGB8 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Smarca1Q6PGB8 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.32■□□□□ 0.84
Smarca1Q6PGB8 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Gm19094-201ENSMUST00000209791 1246 ntBASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Rab3c-203ENSMUST00000224180 967 ntBASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smarca1Q6PGB8 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.3■□□□□ 0.84
Smarca1Q6PGB8 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarca1Q6PGB8 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarca1Q6PGB8 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smarca1Q6PGB8 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms