Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sh3rf1Q69ZI1 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Sh3rf1Q69ZI1 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Sh3rf1Q69ZI1 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
Sh3rf1Q69ZI1 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Sh3rf1Q69ZI1 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Sh3rf1Q69ZI1 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Sh3rf1Q69ZI1 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.45■□□□□ 0.54
Sh3rf1Q69ZI1 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sh3rf1Q69ZI1 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Sh3rf1Q69ZI1 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Fst-202ENSMUST00000223640 2612 ntBASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Sh3rf1Q69ZI1 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sh3rf1Q69ZI1 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sh3rf1Q69ZI1 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Sh3rf1Q69ZI1 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sh3rf1Q69ZI1 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Sh3rf1Q69ZI1 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sh3rf1Q69ZI1 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC18.41■□□□□ 0.54
Sh3rf1Q69ZI1 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sh3rf1Q69ZI1 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Sh3rf1Q69ZI1 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Sh3rf1Q69ZI1 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.4■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms