Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Usp28Q5I043 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Usp28Q5I043 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp28Q5I043 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp28Q5I043 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.75■□□□□ 0.91
Usp28Q5I043 Gm43672-201ENSMUST00000199072 1731 ntBASIC20.75■□□□□ 0.91
Usp28Q5I043 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp28Q5I043 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
Usp28Q5I043 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Usp28Q5I043 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp28Q5I043 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Usp28Q5I043 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.73■□□□□ 0.91
Usp28Q5I043 Nespas-201ENSMUST00000143738 1083 ntBASIC20.73■□□□□ 0.91
Usp28Q5I043 Gm6420-201ENSMUST00000193885 723 ntBASIC20.73■□□□□ 0.91
Usp28Q5I043 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp28Q5I043 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.73■□□□□ 0.91
Usp28Q5I043 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp28Q5I043 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp28Q5I043 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp28Q5I043 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp28Q5I043 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp28Q5I043 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp28Q5I043 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp28Q5I043 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Usp28Q5I043 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp28Q5I043 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.72■□□□□ 0.91
Usp28Q5I043 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp28Q5I043 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Usp28Q5I043 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Usp28Q5I043 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Usp28Q5I043 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC20.72■□□□□ 0.91
Usp28Q5I043 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
Usp28Q5I043 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp28Q5I043 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp28Q5I043 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp28Q5I043 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp28Q5I043 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Usp28Q5I043 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.71■□□□□ 0.91
Usp28Q5I043 AC160393.1-201ENSMUST00000218378 1279 ntBASIC20.71■□□□□ 0.91
Usp28Q5I043 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp28Q5I043 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Usp28Q5I043 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.71■□□□□ 0.91
Usp28Q5I043 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp28Q5I043 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Usp28Q5I043 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC20.71■□□□□ 0.91
Usp28Q5I043 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Usp28Q5I043 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp28Q5I043 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp28Q5I043 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp28Q5I043 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp28Q5I043 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.7■□□□□ 0.9
Usp28Q5I043 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.7■□□□□ 0.9
Usp28Q5I043 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.7■□□□□ 0.9
Usp28Q5I043 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Usp28Q5I043 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp28Q5I043 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp28Q5I043 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Usp28Q5I043 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp28Q5I043 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Usp28Q5I043 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp28Q5I043 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Usp28Q5I043 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.69■□□□□ 0.9
Usp28Q5I043 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.69■□□□□ 0.9
Usp28Q5I043 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Gm10493-201ENSMUST00000097270 612 ntBASIC20.69■□□□□ 0.9
Usp28Q5I043 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Gm38345-201ENSMUST00000192635 1748 ntBASIC20.69■□□□□ 0.9
Usp28Q5I043 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Usp28Q5I043 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Usp28Q5I043 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Usp28Q5I043 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Usp28Q5I043 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp28Q5I043 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Usp28Q5I043 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp28Q5I043 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp28Q5I043 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Usp28Q5I043 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 7.1 ms