Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Limch1Q3UH68 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC21.47■■□□□ 1.03
Limch1Q3UH68 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Limch1Q3UH68 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Limch1Q3UH68 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Limch1Q3UH68 Gm8520-201ENSMUST00000186517 868 ntBASIC21.47■■□□□ 1.03
Limch1Q3UH68 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Limch1Q3UH68 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Limch1Q3UH68 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Limch1Q3UH68 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
Limch1Q3UH68 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Limch1Q3UH68 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Limch1Q3UH68 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Limch1Q3UH68 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Limch1Q3UH68 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.03
Limch1Q3UH68 Gm35558-201ENSMUST00000222675 2219 ntBASIC21.45■■□□□ 1.03
Limch1Q3UH68 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Gm6211-202ENSMUST00000167849 925 ntBASIC21.45■■□□□ 1.02
Limch1Q3UH68 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Limch1Q3UH68 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Limch1Q3UH68 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Limch1Q3UH68 AC123834.2-201ENSMUST00000224038 2340 ntBASIC21.44■■□□□ 1.02
Limch1Q3UH68 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC21.44■■□□□ 1.02
Limch1Q3UH68 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
Limch1Q3UH68 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Limch1Q3UH68 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Limch1Q3UH68 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC21.43■■□□□ 1.02
Limch1Q3UH68 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Limch1Q3UH68 Gm37805-201ENSMUST00000192612 1094 ntBASIC21.43■■□□□ 1.02
Limch1Q3UH68 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Limch1Q3UH68 Gm20049-201ENSMUST00000219950 730 ntBASIC21.43■■□□□ 1.02
Limch1Q3UH68 Gm8309-201ENSMUST00000206627 1448 ntBASIC21.43■■□□□ 1.02
Limch1Q3UH68 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Limch1Q3UH68 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Limch1Q3UH68 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Limch1Q3UH68 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Limch1Q3UH68 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Limch1Q3UH68 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC21.42■■□□□ 1.02
Limch1Q3UH68 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Limch1Q3UH68 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Limch1Q3UH68 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC21.41■■□□□ 1.02
Limch1Q3UH68 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Limch1Q3UH68 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Limch1Q3UH68 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Limch1Q3UH68 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Limch1Q3UH68 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Limch1Q3UH68 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC21.41■■□□□ 1.02
Limch1Q3UH68 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Limch1Q3UH68 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Limch1Q3UH68 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Limch1Q3UH68 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Limch1Q3UH68 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Limch1Q3UH68 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Limch1Q3UH68 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms