Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddb1Q3U1J4 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddb1Q3U1J4 Gm7284-201ENSMUST00000131667 944 ntBASIC23.34■■□□□ 1.33
Ddb1Q3U1J4 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Ddb1Q3U1J4 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddb1Q3U1J4 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Ddb1Q3U1J4 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddb1Q3U1J4 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddb1Q3U1J4 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
Ddb1Q3U1J4 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddb1Q3U1J4 Gm44544-201ENSMUST00000207052 1844 ntBASIC23.33■■□□□ 1.33
Ddb1Q3U1J4 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Ddb1Q3U1J4 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ddb1Q3U1J4 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
Ddb1Q3U1J4 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Ddb1Q3U1J4 Gm25016-201ENSMUST00000158399 131 ntBASIC23.33■■□□□ 1.33
Ddb1Q3U1J4 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC23.33■■□□□ 1.33
Ddb1Q3U1J4 Gm38027-201ENSMUST00000192315 235 ntBASIC23.33■■□□□ 1.33
Ddb1Q3U1J4 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ddb1Q3U1J4 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ddb1Q3U1J4 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Ddb1Q3U1J4 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Ddb1Q3U1J4 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
Ddb1Q3U1J4 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Gm17661-201ENSMUST00000170317 270 ntBASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Gm17971-201ENSMUST00000190239 806 ntBASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddb1Q3U1J4 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
Ddb1Q3U1J4 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddb1Q3U1J4 Gm13042-201ENSMUST00000119244 1955 ntBASIC23.31■■□□□ 1.32
Ddb1Q3U1J4 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddb1Q3U1J4 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Ddb1Q3U1J4 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Ddb1Q3U1J4 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Ddb1Q3U1J4 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddb1Q3U1J4 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddb1Q3U1J4 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddb1Q3U1J4 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ddb1Q3U1J4 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ddb1Q3U1J4 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC23.3■■□□□ 1.32
Ddb1Q3U1J4 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC23.3■■□□□ 1.32
Ddb1Q3U1J4 AC130713.1-201ENSMUST00000228853 1096 ntBASIC23.3■■□□□ 1.32
Ddb1Q3U1J4 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ddb1Q3U1J4 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC23.3■■□□□ 1.32
Ddb1Q3U1J4 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ddb1Q3U1J4 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Ddb1Q3U1J4 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ddb1Q3U1J4 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ddb1Q3U1J4 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ddb1Q3U1J4 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Ddb1Q3U1J4 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Ddb1Q3U1J4 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ddb1Q3U1J4 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ddb1Q3U1J4 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ddb1Q3U1J4 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC23.28■■□□□ 1.32
Ddb1Q3U1J4 Mir2861-201ENSMUST00000175539 82 ntBASIC23.28■■□□□ 1.32
Ddb1Q3U1J4 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
Ddb1Q3U1J4 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ddb1Q3U1J4 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ddb1Q3U1J4 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ddb1Q3U1J4 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ddb1Q3U1J4 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ddb1Q3U1J4 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
Ddb1Q3U1J4 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC23.27■■□□□ 1.32
Ddb1Q3U1J4 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ddb1Q3U1J4 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ddb1Q3U1J4 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ddb1Q3U1J4 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC23.27■■□□□ 1.32
Ddb1Q3U1J4 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ddb1Q3U1J4 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
Ddb1Q3U1J4 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC23.27■■□□□ 1.32
Ddb1Q3U1J4 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ddb1Q3U1J4 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Ddb1Q3U1J4 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ddb1Q3U1J4 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ddb1Q3U1J4 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ddb1Q3U1J4 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ddb1Q3U1J4 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ddb1Q3U1J4 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Ddb1Q3U1J4 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ddb1Q3U1J4 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ddb1Q3U1J4 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC23.25■■□□□ 1.31
Ddb1Q3U1J4 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC23.25■■□□□ 1.31
Ddb1Q3U1J4 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Ddb1Q3U1J4 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Ddb1Q3U1J4 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Ddb1Q3U1J4 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Ddb1Q3U1J4 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC23.25■■□□□ 1.31
Ddb1Q3U1J4 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms