Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdx2P43241 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC17.4■□□□□ 0.38
Cdx2P43241 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.4■□□□□ 0.38
Cdx2P43241 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cdx2P43241 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdx2P43241 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdx2P43241 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdx2P43241 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdx2P43241 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Cdx2P43241 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Cdx2P43241 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
Cdx2P43241 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx2P43241 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx2P43241 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx2P43241 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC17.39■□□□□ 0.37
Cdx2P43241 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Cdx2P43241 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Cdx2P43241 Gm6659-201ENSMUST00000174752 547 ntBASIC17.39■□□□□ 0.37
Cdx2P43241 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx2P43241 AC124603.1-201ENSMUST00000223843 308 ntBASIC17.39■□□□□ 0.37
Cdx2P43241 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx2P43241 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx2P43241 Gm10819-201ENSMUST00000099988 561 ntBASIC17.39■□□□□ 0.37
Cdx2P43241 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx2P43241 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx2P43241 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx2P43241 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Cdx2P43241 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
Cdx2P43241 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Cdx2P43241 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Cdx2P43241 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
Cdx2P43241 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
Cdx2P43241 AC166341.7-201ENSMUST00000221698 126 ntBASIC17.38■□□□□ 0.37
Cdx2P43241 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx2P43241 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.37■□□□□ 0.37
Cdx2P43241 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.37■□□□□ 0.37
Cdx2P43241 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.37■□□□□ 0.37
Cdx2P43241 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx2P43241 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Cdx2P43241 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Cdx2P43241 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC17.36■□□□□ 0.37
Cdx2P43241 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.36■□□□□ 0.37
Cdx2P43241 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx2P43241 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
Cdx2P43241 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdx2P43241 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdx2P43241 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cdx2P43241 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.35■□□□□ 0.37
Cdx2P43241 AC159205.6-201ENSMUST00000224935 887 ntBASIC17.35■□□□□ 0.37
Cdx2P43241 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdx2P43241 Gm7367-201ENSMUST00000057611 492 ntBASIC17.35■□□□□ 0.37
Cdx2P43241 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cdx2P43241 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cdx2P43241 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cdx2P43241 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cdx2P43241 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
Cdx2P43241 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Cdx2P43241 Gm44544-201ENSMUST00000207052 1844 ntBASIC17.34■□□□□ 0.37
Cdx2P43241 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cdx2P43241 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cdx2P43241 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cdx2P43241 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms