Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC20.87■□□□□ 0.93
Col2a1P28481 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col2a1P28481 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col2a1P28481 Tgds-204ENSMUST00000228543 1594 ntBASIC20.86■□□□□ 0.93
Col2a1P28481 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col2a1P28481 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col2a1P28481 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col2a1P28481 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Col2a1P28481 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col2a1P28481 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col2a1P28481 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Col2a1P28481 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col2a1P28481 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col2a1P28481 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col2a1P28481 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col2a1P28481 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
Col2a1P28481 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col2a1P28481 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col2a1P28481 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col2a1P28481 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col2a1P28481 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col2a1P28481 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC20.84■□□□□ 0.93
Col2a1P28481 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.84■□□□□ 0.93
Col2a1P28481 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
Col2a1P28481 Gm43799-201ENSMUST00000201845 579 ntBASIC20.84■□□□□ 0.93
Col2a1P28481 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col2a1P28481 AC108858.1-201ENSMUST00000228461 1498 ntBASIC20.84■□□□□ 0.93
Col2a1P28481 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.84■□□□□ 0.93
Col2a1P28481 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col2a1P28481 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col2a1P28481 AC156016.1-201ENSMUST00000227190 1035 ntBASIC20.83■□□□□ 0.93
Col2a1P28481 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col2a1P28481 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col2a1P28481 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Col2a1P28481 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col2a1P28481 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Col2a1P28481 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col2a1P28481 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 Gm7977-201ENSMUST00000193787 748 ntBASIC20.81■□□□□ 0.92
Col2a1P28481 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC20.81■□□□□ 0.92
Col2a1P28481 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.81■□□□□ 0.92
Col2a1P28481 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col2a1P28481 Gm8668-201ENSMUST00000120559 1447 ntBASIC20.8■□□□□ 0.92
Col2a1P28481 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Col2a1P28481 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col2a1P28481 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
Col2a1P28481 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col2a1P28481 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col2a1P28481 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.8■□□□□ 0.92
Col2a1P28481 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col2a1P28481 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col2a1P28481 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col2a1P28481 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC20.8■□□□□ 0.92
Col2a1P28481 Otx2os1-204ENSMUST00000227221 751 ntBASIC20.8■□□□□ 0.92
Col2a1P28481 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col2a1P28481 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC20.8■□□□□ 0.92
Col2a1P28481 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col2a1P28481 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col2a1P28481 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC20.79■□□□□ 0.92
Col2a1P28481 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.79■□□□□ 0.92
Col2a1P28481 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Col2a1P28481 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Col2a1P28481 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Col2a1P28481 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col2a1P28481 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Col2a1P28481 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Col2a1P28481 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Col2a1P28481 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Col2a1P28481 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC20.79■□□□□ 0.92
Col2a1P28481 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col2a1P28481 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Col2a1P28481 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col2a1P28481 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col2a1P28481 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col2a1P28481 Gm10418-201ENSMUST00000100943 576 ntBASIC20.78■□□□□ 0.92
Col2a1P28481 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Col2a1P28481 Gm6433-201ENSMUST00000118634 875 ntBASIC20.78■□□□□ 0.92
Col2a1P28481 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC20.78■□□□□ 0.92
Col2a1P28481 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col2a1P28481 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms