Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col1a1P11087 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
Col1a1P11087 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col1a1P11087 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Col1a1P11087 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col1a1P11087 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
Col1a1P11087 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC21.5■■□□□ 1.03
Col1a1P11087 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col1a1P11087 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col1a1P11087 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col1a1P11087 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col1a1P11087 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Col1a1P11087 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col1a1P11087 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col1a1P11087 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Col1a1P11087 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC21.49■■□□□ 1.03
Col1a1P11087 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Col1a1P11087 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC21.49■■□□□ 1.03
Col1a1P11087 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col1a1P11087 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col1a1P11087 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col1a1P11087 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Col1a1P11087 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col1a1P11087 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Col1a1P11087 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col1a1P11087 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Col1a1P11087 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC21.48■■□□□ 1.03
Col1a1P11087 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC21.48■■□□□ 1.03
Col1a1P11087 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC21.48■■□□□ 1.03
Col1a1P11087 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC21.48■■□□□ 1.03
Col1a1P11087 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col1a1P11087 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col1a1P11087 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col1a1P11087 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col1a1P11087 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Col1a1P11087 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC21.48■■□□□ 1.03
Col1a1P11087 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col1a1P11087 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col1a1P11087 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
Col1a1P11087 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col1a1P11087 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col1a1P11087 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col1a1P11087 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col1a1P11087 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Col1a1P11087 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col1a1P11087 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col1a1P11087 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col1a1P11087 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col1a1P11087 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col1a1P11087 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col1a1P11087 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC21.46■■□□□ 1.03
Col1a1P11087 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col1a1P11087 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col1a1P11087 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col1a1P11087 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col1a1P11087 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col1a1P11087 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col1a1P11087 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col1a1P11087 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col1a1P11087 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
Col1a1P11087 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.03
Col1a1P11087 Gm18688-201ENSMUST00000204695 1859 ntBASIC21.45■■□□□ 1.03
Col1a1P11087 Gm18101-201ENSMUST00000215769 548 ntBASIC21.45■■□□□ 1.03
Col1a1P11087 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Col1a1P11087 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col1a1P11087 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col1a1P11087 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Col1a1P11087 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Col1a1P11087 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col1a1P11087 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col1a1P11087 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col1a1P11087 Mir5130-201ENSMUST00000175160 84 ntBASIC21.45■■□□□ 1.02
Col1a1P11087 Gm38027-201ENSMUST00000192315 235 ntBASIC21.45■■□□□ 1.02
Col1a1P11087 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC21.45■■□□□ 1.02
Col1a1P11087 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Col1a1P11087 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col1a1P11087 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col1a1P11087 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col1a1P11087 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col1a1P11087 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col1a1P11087 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.44■■□□□ 1.02
Col1a1P11087 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col1a1P11087 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC21.44■■□□□ 1.02
Col1a1P11087 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.44■■□□□ 1.02
Col1a1P11087 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col1a1P11087 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col1a1P11087 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col1a1P11087 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col1a1P11087 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
Col1a1P11087 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col1a1P11087 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col1a1P11087 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col1a1P11087 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC21.43■■□□□ 1.02
Col1a1P11087 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Col1a1P11087 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col1a1P11087 Gm43353-201ENSMUST00000199224 1295 ntBASIC21.43■■□□□ 1.02
Col1a1P11087 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
Col1a1P11087 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Col1a1P11087 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col1a1P11087 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms