Protein–RNA interactions for Protein: P04441

Cd74, H-2 class II histocompatibility antigen gamma chain, mousemouse

Predictions only

Length 279 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd74P04441 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cd74P04441 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cd74P04441 Gm3807-201ENSMUST00000193520 1168 ntBASIC15.3■□□□□ 0.04
Cd74P04441 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC15.3■□□□□ 0.04
Cd74P04441 Gm42555-201ENSMUST00000199304 1039 ntBASIC15.3■□□□□ 0.04
Cd74P04441 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC15.3■□□□□ 0.04
Cd74P04441 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cd74P04441 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cd74P04441 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cd74P04441 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cd74P04441 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cd74P04441 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Cd74P04441 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC15.29■□□□□ 0.04
Cd74P04441 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Cd74P04441 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Gm7290-201ENSMUST00000104990 617 ntBASIC15.29■□□□□ 0.04
Cd74P04441 Gm12918-201ENSMUST00000120234 636 ntBASIC15.29■□□□□ 0.04
Cd74P04441 Gm15710-201ENSMUST00000121821 636 ntBASIC15.29■□□□□ 0.04
Cd74P04441 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC15.29■□□□□ 0.04
Cd74P04441 Gm38205-201ENSMUST00000192243 258 ntBASIC15.29■□□□□ 0.04
Cd74P04441 Gm5075-201ENSMUST00000196916 622 ntBASIC15.29■□□□□ 0.04
Cd74P04441 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC15.29■□□□□ 0.04
Cd74P04441 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC15.29■□□□□ 0.04
Cd74P04441 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cd74P04441 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cd74P04441 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cd74P04441 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC15.28■□□□□ 0.04
Cd74P04441 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cd74P04441 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cd74P04441 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cd74P04441 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC15.28■□□□□ 0.04
Cd74P04441 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC15.28■□□□□ 0.04
Cd74P04441 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Cd74P04441 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cd74P04441 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC15.28■□□□□ 0.04
Cd74P04441 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cd74P04441 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC15.28■□□□□ 0.04
Cd74P04441 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cd74P04441 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cd74P04441 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cd74P04441 Gm45412-201ENSMUST00000210217 2275 ntBASIC15.27■□□□□ 0.04
Cd74P04441 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cd74P04441 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC15.27■□□□□ 0.04
Cd74P04441 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cd74P04441 Gm6598-201ENSMUST00000202719 2615 ntBASIC15.27■□□□□ 0.04
Cd74P04441 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cd74P04441 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cd74P04441 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cd74P04441 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cd74P04441 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cd74P04441 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cd74P04441 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cd74P04441 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cd74P04441 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cd74P04441 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cd74P04441 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cd74P04441 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cd74P04441 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cd74P04441 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Cd74P04441 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Cd74P04441 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC15.26■□□□□ 0.03
Cd74P04441 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 CT010467.1-202ENSMUST00000205406 714 ntBASIC15.26■□□□□ 0.03
Cd74P04441 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Cd74P04441 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Cd74P04441 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC15.26■□□□□ 0.03
Cd74P04441 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cd74P04441 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cd74P04441 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cd74P04441 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cd74P04441 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cd74P04441 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cd74P04441 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Cd74P04441 AC121598.2-201ENSMUST00000228376 2325 ntBASIC15.25■□□□□ 0.03
Cd74P04441 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cd74P04441 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms