Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.42■□□□□ 0.86
Pcdha4O88689 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC20.42■□□□□ 0.86
Pcdha4O88689 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pcdha4O88689 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Pcdha4O88689 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC20.41■□□□□ 0.86
Pcdha4O88689 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Pcdha4O88689 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Pcdha4O88689 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Flg-201ENSMUST00000050758 1488 ntBASIC20.41■□□□□ 0.86
Pcdha4O88689 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Pcdha4O88689 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.41■□□□□ 0.86
Pcdha4O88689 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Pcdha4O88689 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
Pcdha4O88689 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Pcdha4O88689 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Pcdha4O88689 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.86
Pcdha4O88689 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Pcdha4O88689 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Pcdha4O88689 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.39■□□□□ 0.86
Pcdha4O88689 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC20.39■□□□□ 0.86
Pcdha4O88689 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Pcdha4O88689 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Pcdha4O88689 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.39■□□□□ 0.85
Pcdha4O88689 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Pcdha4O88689 Gm15847-201ENSMUST00000121417 1065 ntBASIC20.39■□□□□ 0.85
Pcdha4O88689 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.39■□□□□ 0.85
Pcdha4O88689 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Pcdha4O88689 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.39■□□□□ 0.85
Pcdha4O88689 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Pcdha4O88689 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.39■□□□□ 0.85
Pcdha4O88689 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Pcdha4O88689 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdha4O88689 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdha4O88689 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Pcdha4O88689 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdha4O88689 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdha4O88689 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdha4O88689 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdha4O88689 Gm5297-201ENSMUST00000198555 1171 ntBASIC20.38■□□□□ 0.85
Pcdha4O88689 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdha4O88689 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Pcdha4O88689 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pcdha4O88689 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Pcdha4O88689 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
Pcdha4O88689 Gm37856-201ENSMUST00000191634 999 ntBASIC20.37■□□□□ 0.85
Pcdha4O88689 Spcs1-207ENSMUST00000228767 1008 ntBASIC20.37■□□□□ 0.85
Pcdha4O88689 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Pcdha4O88689 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Pcdha4O88689 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pcdha4O88689 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Pcdha4O88689 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pcdha4O88689 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pcdha4O88689 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Pcdha4O88689 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pcdha4O88689 Zfp783-201ENSMUST00000095946 670 ntBASIC20.35■□□□□ 0.85
Pcdha4O88689 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pcdha4O88689 Gm38345-201ENSMUST00000192635 1748 ntBASIC20.35■□□□□ 0.85
Pcdha4O88689 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pcdha4O88689 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Pcdha4O88689 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdha4O88689 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdha4O88689 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Pcdha4O88689 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdha4O88689 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Pcdha4O88689 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms