Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Pcdh1F7BJK1 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Pcdh1F7BJK1 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Gm8493-201ENSMUST00000196881 489 ntBASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Pcdh1F7BJK1 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Gm38205-201ENSMUST00000192243 258 ntBASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Pcdh1F7BJK1 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Pcdh1F7BJK1 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
Pcdh1F7BJK1 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
Pcdh1F7BJK1 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Tgds-204ENSMUST00000228543 1594 ntBASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Gm8309-201ENSMUST00000206627 1448 ntBASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 AC121598.2-201ENSMUST00000228376 2325 ntBASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Gm26971-201ENSMUST00000182423 1072 ntBASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Gm45417-201ENSMUST00000209533 758 ntBASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Pcdh1F7BJK1 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdh1F7BJK1 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdh1F7BJK1 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdh1F7BJK1 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdh1F7BJK1 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdh1F7BJK1 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdh1F7BJK1 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Pcdh1F7BJK1 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms